| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90612 |
|---|
| Symbol | SPE1 |
|---|
| ID | 4839972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | - |
|---|
| Start bp | 488192 |
|---|
| End bp | 489666 |
|---|
| Gene Length | 1475 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640391287 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | XP_001385782 |
|---|
| Protein GI | 126138518 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.253647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCTT CGATTGAAGT CTTCCAAGAT GAACCAATTT TCGAATCCTC CCTCAAAAGT
GATTCAACTA TTGAAAGTGT TCGCAAGTTG TCTGTTTCAG TCAATAAGGC TGCTGTTTTG
AGAGCCTCTG TTGTTGCGGA AATCTCCTCC TCCTCCTCCT CCTCCAAAGA CCAATTGGCC
AGGGAGTTGA TTAACAGAGC CTTGGTCAAT CACATTTCTG GTATTGACCA CGAGGAATGT
GAAGCAGGTG ACGAAGACTC GTTTTTTGTC TGTGATTTGG GTGAAGTCTA CCGTTCTTTT
GGTGTCTGGC AGCAAAAGTT GCCCCAGGTC CAGCCTCACT ATGCCGTAAA GTGCAACACC
AATTTGGAGG TGATCAAGTT GTTGGCTTCT TTGGGAGTCA ACTTCGATTG TGCTTCTAAG
AACGAGATCG ATACGATCTT GAACTTGGGG ATCAGCCCAG ACAGAATTGT CTATGCTAAT
CCTTGCAAGA CTAATTCCTT TATTAGACAT GCTTCCAAGG CAAATGTCAA CTTGACTACA
GTTGACAATG CCCAGGAATT GCACAAGTTG AAAAAATTTC ACCCAGATTG TGGGATTTTG
ATCAGACTCG CCACGGATGA TGAAACGGCT CAATGTCGTT TGTCAACGAA GTTCGGTTGC
ACCTTAAGTG CTGCTATTAA CGAGCTTTTA CCATTGGCAA AGGAGTTAGG TTTGAACGTT
AGAGGAGTCG CATTCCATGT TGGTTCTGGT GCCAAGGACT TCGACTCTAT CTACAAAGCC
ATTAGGGATT CGCGTGATGT TTTTAACAGG GCCATCACGG AATATGGTTT CGAAATGTCC
ATCTTGGATA TCGGTGGTGG ATTTGAGTTG GAGACGTTTG ATGAATCGTC TTCTATGGTT
TGTTCTTCGT TGAACAAGTT CTTCCCAGCA GATTTTGTCT CCCAAAACGG AATCAAGTTT
ATTGCTGAGC CAGGAAGATT CATGGTATCC AACGCTTTCA CCTTAGCAGC CCATATCATT
GCCCGTAGAG ATTTGGATTT AAAAGCTACT TTTGTATCTG AAGAGGACAA GCAAGTTTCT
GCCATGGTTT ACATCAACGA CGGTGTTTAC GGTAACATGA ACTGCATCTT GTTTGACCAC
CAGAACCCAC AGGCACATGT GTTGCAGCAC AAGAACAAGT TTTTCTATCA TCAAGACGAA
GAGAGTGATG ATCAGAAATT AATCGACGAT GATGCTAAGG GTGAGCATCA CTTTTCGATT
TGGGGACCAA CTTGTGACGG GTTAGACTGT GTTGCTAGCA AGTGCACCTT GTCTCACGAC
GTAGAAGTCG GTGACTGGTT GTACTTTCCA AACCTAGGAG CCTACACCTC AGCTGCTACC
ACTGCCTTCA ACGGGTTGGG TGGTAACTCA CACATTATCT ACGTTTGTTC TGAGGATCTC
TGATCCGAAA GTCATATATG CCATATATAT TGCAG
|
|---|
| Protein sequence | MTPSIEVFQD EPIFESSLKT SVVAEISSSS SSSKDQLARE LINRALVNHI SGIDHEECEA
GDEDSFFVCD LGEVYRSFGV WQQKLPQVQP HYAVKCNTNL EVIKLLASLG VNFDCASKNE
IDTILNLGIS PDRIVYANPC KTNSFIRHAS KANVNLTTVD NAQELHKLKK FHPDCGILIR
LATDDETAQC RLSTKFGCTL SAAINELLPL AKELGLNVRG VAFHVGSGAK DFDSIYKAIR
DSRDVFNRAI TEYGFEMSIL DIGGGFELET FDESSSMVCS SLNKFFPADF VSQNGIKFIA
EPGRFMVSNA FTLAAHIIAR RDLDLKATFV SEEDKQVSAM VYINDGVYGN MNCILFDHQN
PQAHVLQHKN KFFYHQDEES DDQKLIDDDA KGEHHFSIWG PTCDGLDCVA SKCTLSHDVE
VGDWLYFPNL GAYTSAATTA FNGLGGNSHI IYVCSEDL
|
|---|
| |