| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90578 |
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| Symbol | SPB1 |
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| ID | 4839955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 877241 |
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| End bp | 879795 |
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| Gene Length | 2555 bp |
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| Protein Length | 831 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640391270 |
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| Product | AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) |
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| Protein accession | XP_001385532 |
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| Protein GI | 126138018 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0293] 23S rRNA methylase |
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| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.32878 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TAAGCATCAA AAAATGGGTA AGACGCAAAA GAAGAATAGC AAGGGTCGTT TAGATAGATA
CTACTACCTC GCTAAAGAAA AAGGGTATAG GGCCCGTTCT TCTTTCAAGA TTATCCAAAT
AAACGAGAAG TATGGTCATT TCCTTGAAAA GTCCAAAGTT GTCATTGACT TATGTGCTGC
ACCTGGTTCT TGGTGTCAAG TGGCATCCCA GTTATGTCCG ATCAACTCTT TAATCATTGG
TGTTGATATC GTTCCTATCA AGCCATTACC AAATTGTATA ACTTTCCAAT CAGATATTAC
CACAGAAGAT TGTAGATCTA GATTAAGAGG TCACATGAAA ACATGGAAAG CAGACACAGT
TCTTCACGAT GGTGCTCCAA ATGTGGGTTT AGGATGGGTT CAAGATGCCT TTACCCAATC
TCAGTTAACT TTGCAAGCGT TGAAATTGGC AGTAGAGAAC TTGGCGGCCG GCGGAACTTT
TGTAACCAAA ATTTTCAGAT CCAGAGACTA CAACAACTTA ATGTGGGTTT TCCAACAATT
ATTTGATAAA GTTGAAGCTA CTAAACCTCC AGCATCTCGT ACTGTTTCTG CTGAAATCTT
CGTTGTATGT AAAGGTTTTA AAGCCCCTAA GAAGTTGGAT CCTAGATTGT TGGATCCGAA
AGAGGTTTTC GAAGAATTAG CGGCTGGCCC TGAAAATAGC GAGGCTAAAA TATTCAGGCC
AGAAAAAAAG ACCAGGCACA GAACAGGTTA TGAAGAGGGG GACTACTTGT TATATCACGA
AATTCCAATT TTGGAATTCA TACGAAGTGA AGATCCTATT ACATTATTGA GCAGTAACAA
CAAGTTGGTA GAACCATCAA AAGAAGATCA TGAATGGAAA ATCTTGAAAA AGTTGAGACA
TTGCACTCCT GAATTACTTG AATGCATCAA GGATTTAAAG GTTTTAGGTA GAAAGGAATT
CAAATTAATC TTGAAATTCA GAAAAGAAGC TCGTGATTTG TTGGGCTTAG AAGACAAAGA
AGACCTTAAT AAAAGTGATT TAGTCGAAGT TGAACCTTTG ACAGAAGAGC AGCAAATTGA
TAAAGAACTA GAGGAACTCA GCAGTAAGCA GAAACAAAAG GCTAAGAGAG CTAAGAAAAA
TGCAAACGAA TCGAAGCAGA AGGAAATCGT ACGAAACCAA ATGAATATGT TGACAGATAT
GAACATAGGA ATTGAAGCTG CTCAAATTGG CTCTGAATCA TTATTCAACT TGAAAACTGC
CGAAAAGACT GGACAATTGG ATAAATTGGC AAAAGGTAAG AAAAGAATGG TTTTTAACGA
CGAAGAGATT GCCAAAGGAA ATGACATTCA TGTTGACGAA GACGCCGAAA ACGTTGCAAC
GGATGACGAG CTTGACGAGT TGGAAGCCCA ATTGGACGAT ATGTACAATT CTTATCAAGA
AAGGAAGGCA GAGAGAGATG CAAACTACCG AGCAAAGAAA GCCAGAGGTG ACGTTGACGA
TGAAGCTTGG GATGGTATTC GTTCAGAAGA TGAGGATGAA GATGCCAATC TTGAAGAGAG
AGACTATGAG ATGGATTCAG AATCTGAATC TGATTCCGAT GATGATGAAC ATATCAGATT
GATCGCAGAT AAGAAGAAAG AAGGTTTATC AAAGAACGCG AAGGTGTTCT TTGCTTCAGA
TTCTATTTTT GGAGAATTAA CAGATGATAC ATTATTGAAA GAAATTGAAA ATAAGAAGTT
ATCTTCAAAT GTCTCCTCAA ATGGTTCAGC AAGAATCTTT AAATCGCAAG ATGGACAAGA
ATCGGAGGAT AGCGAGGATT CTGAAAGTGA CGAAAGTGAC TTTGAGATTA TGCCAGCAGA
AAAGGAACAC GAAGAAGTAG AAGACGACTC TGATTCCGAG CAAGAATCAA TTGCTCGCCA
ATATTCGAGG GCAAAATCTC AACAGCAGCG TATTGATTTA GCAACGGTCG AAGCTATGAC
TTTGGCTCAT CAGGTTGCTT TGGGTCAAAA GAATAAGCAC GACTTGATTG ATGAAGGTAT
TAACAGGAAC TCTTTTAGAG ATGTGGACAA CTTACCAGAA TGGTTTATTG ATGATGAAAA
GAGGCACTCC AAGATTATCA AACCCATAAC CAAGGAAGCG GCTATGGCAA TAAAAGAAAA
GCAGAAGCAA CTTAATGCAA GACCTATTAA AAAGGTTTTA GAGGCGCAGG GACGTAAGAA
GATGAGAGCA TTGAGAAGAT TAGAGAAGCT TAAGAAGAAG TCCGACTTGA TTAACGAAGA
CAGCGGCAAG TCTGAGAGAG ATAAGGCTGA AGAAATCCAG AAGTTGATGA AGAAATTGAC
CAAGAAACAA AAACAAAAGC CCAAGACCAC ATTAGTTGTC GCCAGAGGTT CCAACAGAGG
ATTGAGTGGT AGACCAAAGG GTGTCAAGGG TAAATATAAG ATGGTTGACG GTGTCATGAA
GAATGAACAA AGGGCATTGA GAAGAATCGC TAAGAAGCAT AAGAAGTAGT ACTTTATAGA
CAATTTAATT TAACATGCAT ATACATTATT TTTGT
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| Protein sequence | MGKTQKKNSK GRLDRYYYLA KEKGYRARSS FKIIQINEKY GHFLEKSKVV IDLCAAPGSW
CQVASQLCPI NSLIIGVDIV PIKPLPNCIT FQSDITTEDC RSRLRGHMKT WKADTVLHDG
APNVGLGWVQ DAFTQSQLTL QALKLAVENL AAGGTFVTKI FRSRDYNNLM WVFQQLFDKV
EATKPPASRT VSAEIFVVCK GFKAPKKLDP RLLDPKEVFE ELAAGPENSE AKIFRPEKKT
RHRTGYEEGD YLLYHEIPIL EFIRSEDPIT LLSSNNKLVE PSKEDHEWKI LKKLRHCTPE
LLECIKDLKV LGRKEFKLIL KFRKEARDLL GLEDKEDLNK SDLVEVEPLT EEQQIDKELE
ELSSKQKQKA KRAKKNANES KQKEIVRNQM NMLTDMNIGI EAAQIGSESL FNLKTAEKTG
QLDKLAKGKK RMVFNDEEIA KGNDIHVDED AENVATDDEL DELEAQLDDM YNSYQERKAE
RDANYRAKKA RGDVDDEAWD GIRSEDEDED ANLEERDYEM DSESESDSDD DEHIRLIADK
KKEGLSKNAK VFFASDSIFG ELTDDTLLKE IENKKLSSNV SSNGSARIFK SQDGQESEDS
EDSESDESDF EIMPAEKEHE EVEDDSDSEQ ESIARQYSRA KSQQQRIDLA TVEAMTLAHQ
VALGQKNKHD LIDEGINRNS FRDVDNLPEW FIDDEKRHSK IIKPITKEAA MAIKEKQKQL
NARPIKKVLE AQGRKKMRAL RRLEKLKKKS DLINEDSGKS ERDKAEEIQK LMKKLTKKQK
QKPKTTLVVA RGSNRGLSGR PKGVKGKYKM VDGVMKNEQR ALRRIAKKHK K
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