| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90501 |
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| Symbol | PAB1 |
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| ID | 4840386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 777504 |
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| End bp | 779759 |
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| Gene Length | 2256 bp |
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| Protein Length | 632 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640391701 |
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| Product | Polyadenylate-binding protein, cytoplasmic and nuclear (Poly(A)-binding protein) (PABP) (ARS consensus binding protein ACBP-67) (Polyadenylate tail-binding protein) |
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| Protein accession | XP_001385508 |
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| Protein GI | 126137970 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0724] RNA-binding proteins (RRM domain) |
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| TIGRFAM ID | [TIGR01628] polyadenylate binding protein, human types 1, 2, 3, 4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.528167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTTCTTTTGG TCTTTCCAAT TCCAATCCAC CCTTTTTTTA TCAAACAAAT TATTCGTTTC
TACGATTAAT TATAAAAAAA TCCAAAAAAA AAATCCAACC ATGTCTGCCG CTGACGCCAA
CCAACTCCAA GAATCGTTGG AAAAGTTGAA CCTCGATTCT GCTCCAGCCG CCGCTGAAGA
AGAAGCTGTT GCTGCTGAAT CTGCTCCAGC CGGTGAAGAA GGCGCTGACT CTGCCAACGT
TGCTGAGAGC ACTGCCTCTT TGTATGTTGG AGAATTGAAC ACCTCTGTCA ACGAAGCTAC
GTTATTCGAG ATCTTCTCTC CTATTGGCCA GGTTTCGTCT ATCAGAGTCT GTAGAGATGC
TGTTTCGAAG AAGTCTTTGG GTTACGCCTA CGTCAACTAC CACAAGATGG AAGACGGAGA
AAAGGCTATC GAAGAATTGA ACTACAGCCC AATTGAAGGC CGTCCTTGTC GTATCATGTG
GTCTCAGAGA GACCCTTCTG CCAGAAGATC AGGTGACGGC AACATTTTCA TCAAGAACTT
GCACCCTGCC ATCGACAACA AGGCTTTACA CGACACCTTT TCCACTTTCG GTAAGATCTT
GTCGTGTAAG GTCGCCACTG ACGACATGGG TCAGTCCAAG TGCTTCGGTT TTGTTCACTA
CGAGACTGCC GAAGCCGCAG AAGCCGCCAT CGAAAACGTT AACGGCATGT TGTTGAACGA
CCGTGAAGTC TTTGTTGGTA AGCACATCTC CAAGAAGGAC CGTGAATCCA AGTTTGAGGA
AATCAAGGCC AACTTCACCA ACATCTATGT CAAGAACATT GACTTGGAAT ACTCTGAAGA
GGATTTGAAG AAGTTGTTCA CTCCATACGG TGCTATCACT TCCATCTACT TGGAAAAGGA
CGCCGAAGGT AAGTCTAAGG GTTTCGGTTT CGTCAACTAC GAGGGTCACG AAGCCGCTGT
CAAGGCTGTC GAAGAGTTGA ACGACAAGGA AATCAATGGT CAAAAGATCT ACGTTGGTAG
AGCTCAAAAG AAGAGAGAAA GAATGGAAGA GTTGAAGAAG CAGTACGAAA ACACCAGATT
GGAAAAGTTG TCCAAGTACC AAGGTGTCAA CTTGTTCATC AAGAACTTGG ACGATACTAT
CGACTCCGAA AAGTTGGAAG AAGAATTCAA GCCTTTCGGA ACCATCACCT CTGCTAGAGT
TATGGTCGAT GAAACTGGTA AGTCCAAGGG TTTCGGTTTC GTTTGTTTCT CGTCCCCAGA
AGAAGCCACC AAGGCTATCA CCGAAATGAA CCAAAGAATG TTCTTTGGCA AGCCATTGTA
CGTCGCCTTG GCTCAACGTA AGGATGTCAG ACGTTCTCAA TTAGAACAAC AGATCCAAGC
CCGTAACCAG ATGAGAATGC AAAATGCTGC TGCTACCGGT GGAATCCCAG GTCAATTCAT
TCCTCCAATG TTCTATGGCC AACAAGGTTT CTTCCCACCT AACGGTAGAG GTAACGCTCC
TTTCCCAGGT CCAAACCCAC AGATGATCAT GAGAAGAGGT CAACCATTCG GTGGTCCAGA
ACAATGGCCA AGACCAGGTC CTAACGGCCA ACCAGTCCCA GTTTACGGTA TCCCACCACA
AGCTTACTCT GACTTCAACG GTCAAAACAT CCGTCAACAA AGAGGCTACT ACCCTAACCG
TAACCAGAAC AAGGGCCGTC AACAAAGAGA CTTGGCTGCT ATCATTGCCT CTGCTCCTCC
TGACCAACAA AAGAGAATCT TAGGTGAAGA ATTGTACCCT AAGATTGTTG CTACCGGCAA
GGCTCAAGAA CCAGAAGCCG CTGGTAAGAT TACCGGTATG ATGTTGGACT TGGACAACCA
AGAGATCTTA GCTTTGTTGG AAGACGACGA GTTGTTCACC AACCACTTTG AAGATGCTTT
GACTGCTTTC GAGGAATACA AGAACTCGGA AGCTGCTGCT CCTGTTGCTC CAGCTGCTCC
AGCTGAGCCA CAAGCTTAAA TTTCTACTCA CAGATTCTTG AATGATTTGG AACAGCTCAA
CCTAAGCGAA GACAACTAAC AAAAAAATAT TGATCGGAAG GAATAGAAGA AATGGACGGT
GGTGTCATTG TCGTTTTTTT CTGAAGTATT CGTCAAGGAT GAATGTTTCA GTGTATTCTA
TTTTCTAAGT ATGTAATGTA ATAGTTTTTT GGTAAATGGG TTAATGGATT TATTATATAC
AAACAAGAAA AAAATATGAA AAAGATATAA TATTTT
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| Protein sequence | MSAADANQLQ ESLEKLNLDS APAAAEEEAV AAESAPAGEE GADSANVAES TASLYVGELN
TSVNEATLFE IFSPIGQVSS IRVCRDAVSK KSLGYAYVNY HKMEDGEKAI EELNYSPIEG
RPCRIMWSQR DPSARRSGDG NIFIKNLHPA IDNKALHDTF STFGKILSCK VATDDMGQSK
CFGFVHYETA EAAEAAIENV NGMLLNDREV FVGKHISKKD RESKFEEIKA NFTNIYVKNI
DLEYSEEDLK KLFTPYGAIT SIYLEKDAEG KSKGFGFVNY EGHEAAVKAV EELNDKEING
QKIYVGRAQK KRERMEELKK QYENTRLEKL SKYQGVNLFI KNLDDTIDSE KLEEEFKPFG
TITSARVMVD ETGKSKGFGF VCFSSPEEAT KAITEMNQRM FFGKPLYVAL AQRKDVRRSQ
LEQQIQARNQ MRMQNAAATG GIPGQFIPPM FYGQQGFFPP NGRGNAPFPG PNPQMIMRRG
QPFGGPEQWP RPGPNGQPVP VYGIPPQAYS DFNGQNIRQQ RGYYPNRNQN KGRQQRDLAA
IIASAPPDQQ KRILGEELYP KIVATGKAQE PEAAGKITGM MLDLDNQEIL ALLEDDELFT
NHFEDALTAF EEYKNSEAAA PVAPAAPAEP QA
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