Gene PICST_90304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_90304 
Symbol 
ID4839968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp474024 
End bp475010 
Gene Length987 bp 
Protein Length256 aa 
Translation table12 
GC content41% 
IMG OID640391283 
Productpredicted protein 
Protein accessionXP_001385778 
Protein GI126138510 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1890] Ribosomal protein S3AE 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.156537 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.643856 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
AAAAACTTCA TTGAAAAAAT TTAACTACGT CTTTTTCGTT TTGAAGGTTT TGAACACACA 
ACACCTATAA CGTATATATC AATATGGCTG TCGGTAAGAA CAAGAGATTG TCCAAGGGTA
AGAAGGGTTT GAAGAAGAAG GTCGTCGACC CATTCACCAG AAAGGATTGG TTTGACATCA
AGGCCCCATC TACCTTCGAA AACAGAAACG TTGGTAAGAC CTTGATCAAC AGATCCACCG
GTTTGAAGAA CGCCGCCGAT GGTTTGAAGG GTCGTGTTGT CGAAGTATCC TTGGCTGACT
TGCAAGGTTC CGAAGACCAC TCCTACAGAA AGATTAAATT GAGAGTTGAC GAAGTCCAAG
GTAAGAACTT ATTGACCAAC TTCCACGGTT TGGACTTCAC TTCCGACAAG TTAAGATCCT
TGGTCAGAAA GTGGCAATCT TTGGTTGAAG CCAACGTCAC CGTCAAGACC TCTGACGACT
ACGTCTTGAG AGTCTTCGCC ATTGCCTTCA CCAAGAGACA AGCCAACCAA ATCAAGAAGA
CTACCTACGC TCAATCCTCC AAGTTGAGAG AAGTCAGAAA GAAGATGATC GAAATCATGC
AAAGAGAAGT TTCCAACGTC ACCTTGGCTC AATTAACCTC CAAGTTGATC CCAGAAGTCA
TTGGCCGTGA AATTGAAAAG TCCACTCAAA CCATCTTCCC ATTGCAAAAT GTCCACATCA
GAAAGGTTAA GTTGTTAAAA CAACCTAAGT TCGACTTGGG TGCTTTGTTG GCCTTGCACG
GTGAAGGTTC CACCGAAGAA AAGGGTAAGA AGGTCAACGC CGGCTTCAAG GATGTTGTTT
TAGAATCTGT TTAAGTCCGC TAGTGATTTT ACTTCTCAAT TGTATTTTGT TAGACTTGAT
CAAGAGAGGG ATACAAGTAG ACTTTTTATT AATTATAAAA TAGCATGTTA AATATAAAAC
AAATTTCAAT ATAAACTAAT TTACTAG
 
Protein sequence
MAVGKNKRLS KGKKGLKKKV VDPFTRKDWF DIKAPSTFEN RNVGKTLINR STGLKNAADG 
LKGRVVEVSL ADLQGSEDHS YRKIKLRVDE VQGKNLLTNF HGLDFTSDKL RSLVRKWQSL
VEANVTVKTS DDYVLRVFAI AFTKRQANQI KKTTYAQSSK LREVRKKMIE IMQREVSNVT
LAQLTSKLIP EVIGREIEKS TQTIFPLQNV HIRKVKLLKQ PKFDLGALLA LHGEGSTEEK
GKKVNAGFKD VVLESV