Gene PICST_90151 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_90151 
SymbolGON1 
ID4839928 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp517980 
End bp520210 
Gene Length2231 bp 
Protein Length680 aa 
Translation table12 
GC content41% 
IMG OID640391243 
Productpossible rho-like GTPase involved in secretory vesicle transport 
Protein accessionXP_001385448 
Protein GI150866000 
COG category[R] General function prediction only 
COG ID[COG1100] GTPase SAR1 and related small G proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.907201 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
CCCAATGTCG CAAGACACGC TTAGAGTGGT AGTATGCGGA GACGACACTG TAGGGAAGTC 
GTCCCTCGTA TCGTCACTAA TAAAAGAAAC AATTATCACG GAGCAAGAAG TACTTCCACC
TATAACAATA TCTGGAGACG ACTATACCAA CAGTTTTCTG GAATATGCCT CGAGCACTGA
GGGCAAGAGC TCCAAGAAGT CCCGAAAACA TCCACTGAAG AAAGATGAAT CGTTGCAGAA
GTTCAATGAG ACTGGAATGA AGTTGGTACT GAAATATATA CCTAACAAGA CAGTGATAAT
AGATACAATA TCGTCTGACA TGGTACAACT ACAAAAGGAA TTGAAACGAG CCGATGTTAT
TTGGCTTGTA TATTCTGACC ACTATACGTA TGAAAGAATC TCATTGCACT GGATGCCGAT
GTTCAGATCT ATGGGAGTCA ATTTGCCCAT AGTGTTATGT GCCAACAAAT CTGACCTTTT
GCCAAAAGAC ACTTTAAAGA CTCAGAACAC TGACGAGTTC ATTCCGTTGA TCCATGAGTT
CAAGGAAATA GAAGCCTGCG TGAGATGTAG CGCTAAGGCC AATTACAACG TAGTGGAGGC
CTTCTATCTA TGCCAAAGAG CGATCACCCA TCCCATTTCG CCTATTTTCG ACTCTAAAGA
AGGCAATTTA AAACCATCAG CTATCGCTGC ATTGAAGAGA GTCTTTTTCC TTTGTGACAA
GGATCAAGAT GGACATCTAA ATTTTGAAGA ATTATCTGAT TTGCACAAAA AGTGCTTTGG
AAAGCTGGCT ACCCAGGCAG AATATGACGT GATAGTAAAA ACCCTAGACC AGAGGATATA
CCCAGACCTC TCTTCGGGAA GTACAGGCAT CTCTGAAGAT GGATTCATTT TACTTAACAA
GATTTACGCT GAAACTGGCA GACACGAAAC GATATGGGGC ATATTGAGAG CTTACCACTA
TACAAACTCA TTGTCTTTGA ACGATAGATT CTTGTTTCCA AAACTAGACG TAAATCCCAA
CTCAAGTGTA GAATTGAGTC CAACAGGGTA TCGATTTCTT GTTGACTTAT TCTTGAAATT
TGACAAAGAC AATGATGGTG GACTTAACGA AGAAGAGCTC AACAACTTGT TCCGACCTAC
TCCTGGAATT CCCAAGCTCT GGCAAGAGTC CAACTTCCCA TCTTCCATAG TTTGTAATGA
GGCAGGATAT GTAACATTGC AAGGATGGTT GGCACAATGG AATTTGACCA CTTTTTTGGA
CTACAAGGCA ACATTGGAGT ATTTGGCATA TTTAGGGTTC GATGAAGATA TTTCAGTCAA
GGCATTGAGA ATCACCAAGC CTCGTAAGAG AAGACAGAAA CAAGGTAAAT TCTACAGACA
GAACGTCAAT GATAGAAACA TATTCAACTG TTTCATCTTA GGAGCACCTA AGTCAGGAAA
AAGTTCCCTT CTTGAACTGT TCTTGCGTGG ATCATACAGT GAAACATATT CGCCCACCAT
TAAACCTCGA TTGTGTATCA AAGATATTGA ATTGAGAGGG GGAAAACAGT GCTACTTAAT
TCTCGAAGAG CTCGGAGTCC ACGAGTCTGC CATCCTTGAA AACAAACTGA GGCTAGACCA
GTGTGATGTC ATATGCTATG CTTATGATTC TTCCGATCCA GAACTGTTTC AATATCTTGT
TGAATTACGA GATAAGTATT CTGTCTTGCT TGACGAGATT CCTTCGGTAT TCGTAGCCCT
TAAAGCCGAC TTAGATAAAC AACAGCAGAG ATCAGATGTG CAGCCAGAAA ACTACACTAG
AGACCTATAT CTTGGGTCCC CACTACATAT TTCTTCTGCT TGGACTACTT CTTTACACGA
ACTATTTATT CAACTAGTAG ATGCGGCTAA GATGCCAAGT ACAGCTACGC CGGGTCTAGA
AAGCGAACCG GATTTTACAG ACCAGGAGAA TTTCAAACAC CTTGTCATGG CAGGAGGAGC
GGTAACTGTC ATGACCATAG TGTCAGTATG GATCTGGCGG AGTTCTGTAC AAAGTTCCCG
AATCTAGGAA ACCATATCAG CTGCACATAC TTTATAGTGG AACCTGCGCG ACATGCACGA
CATCCCGAAA TTTTTCTGCG ACAAAGATTT TTTTTTGAAC CTCATCCCTC TATAGAAGTG
AAAAATCGAA TTCAATCACT AGAGGTTCAT ATCTAGACTC ATACCAAAAT AGCTAGTTAA
CACGATGTCT G
 
Protein sequence
MSQDTLRVVV CGDDTVGKSS LVSSLIKETI ITEQEVLPPI TISGDDYTNS FSEYASSTEG 
KSSKKSRKHP SKKDESLQKF NETGMKLVSK YIPNKTVIID TISSDMVQLQ KELKRADVIW
LVYSDHYTYE RISLHWMPMF RSMGVNLPIV LCANKSDLLP KDTLKTQNTD EFIPLIHEFK
EIEACVRCSA KANYNVVEAF YLCQRAITHP ISPIFDSKEG NLKPSAIAAL KRVFFLCDKD
QDGHLNFEEL SDLHKKCFGK SATQAEYDVI VKTLDQRIYP DLSSGSTGIS EDGFILLNKI
YAETGRHETI WGILRAYHYT NSLSLNDRFL FPKLDVNPNS SVELSPTGYR FLVDLFLKFD
KDNDGGLNEE ELNNLFRPTP GIPKLWQESN FPSSIVCNEA GYVTLQGWLA QWNLTTFLDY
KATLEYLAYL GFDEDISVKA LRITKPRKRR QKQGKFYRQN VNDRNIFNCF ILGAPKSGKS
SLLESFLRGS YSETYSPTIK PRLCIKDIEL RGGKQCYLIL EELGVHESAI LENKSRLDQC
DVICYAYDSS DPESFQYLVE LRDKYSVLLD EIPSVFVALK ADLDKQQQRS DVQPENYTRD
LYLGSPLHIS SAWTTSLHEL FIQLVDAAKM PSTATPGLES EPDFTDQENF KHLVMAGGAV
TVMTIVSVWI WRSSVQSSRI