Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_84844 |
Symbol | |
ID | 4839867 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | + |
Start bp | 1272991 |
End bp | 1274920 |
Gene Length | 1930 bp |
Protein Length | 242 aa |
Translation table | 12 |
GC content | 45% |
IMG OID | 640391182 |
Product | predicted protein |
Protein accession | XP_001385598 |
Protein GI | 126138150 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5078] Ubiquitin-protein ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | CCAACTTGTT GATTTCGATT CCGCTGGCCG TCTCTAGCCG ACACCGGAGT CTTAGTATCA CGTGTCGTTT CTGTTAGCCG TTGTCTTTTC CCGAGATTCT CTCTTCCCGC TGATTGTGGT CTGTTATCAT CTCATCACCG TCATAACCAC TGCTCTTTCC AAAGAGAAAA ACAGCAGGTT ACGAAGTCAT AAAGCCGACA CAGCCATATC CCCTGTGTCT CTCCGTTCTC TGTCACTACA GCTGGAGATC CTGAACTGCT CTGCTGGTCC TCTGATTCTA CTGAGCACCT CACCAACTCG CCCGAATTCT CATTAATTCG CACTGAATTT CTGTGGAGAT ACTGAGAGAG AAACAAGTGA TAACGACTTT TCTGAGCCCC CAAAATCAGC AGCTCCGAGA CTGGCATCCA TAGTGTCACA CTAGCCTGTC GTATCCACAG CCATTTCCCT TGAGTCTTGT CTAGCAGTAT CTGTTTTGGC TCCCTAACCA TCAGTCTTCT GGCACTCTCT ATAGTGGCTC TTCCGTTCCC GCGTCTCCTA AAAAATCCTG GACGGTTCTT TTTTTTGTGC GAGTATCCAT CTTCGTTTTT TTGGACTTCT TTTTCTTACA AATCGGAGCA TTACTTTCAT ATTCACTATC CTCATACTAC ATCCACTTCG TTGGCATCCT GGTTATCAAC CACGTTGACT ACTTACCTAC TATAACTGGT TTTCTTAACG ATACTCATAT CTCATAGTTA ACTACCATAG CTTTCTACTG ATTACACCAA GGTAACTCTC AGTTCTTATT CATTTTCATT TATCATCAAA ACTACACACC CCTATTCCTA CCACTTCCTA CAACATGAGC TCAAAGTCCG CTGCTGCCAT CTTGCAACGA CAATTCAAAG AACTCACCGA CCCCAAAAAG GCTATCCCCT CCTTCCACAT AGAGCTCGAT GACGACAACA TCTTCCTCTG GAACATCGGC ATCATGGTGC TCAACAAAGA CTCCATGTAC CACGGCGGCT ATTTCAAGGG CCAGATGCGG TTCCCATCGG ATTTCCCCTT CGCACCGCCC ACCTTCAGGT TCACGCCGGC CATCTACCAT CCCAACGTTT ACCGTGATGG CCGTTTGTGC ATCTCCATTT TGCACCAGGG TGGAGATCCC ACCTCGGACG AACCTGATTC CGAGACGTGG ACTCCAGCCC AGACAGTTGA GAGTGTTTTG ATCTCGATTG TATCGCTTTT GGAGGATCCA AATGTCTCTT CTCCTGCCAA TATTGACGCC TCTGTGGAGT TCAGAAAGAA CCCAGAAGCC TACAAGAAGA AGGTGTTGCA CGAAGTTGAA AGATCGAAAG CTGATATTCC AGAAGACTTT ATCATGCCTG AGTCGGAATT TGCAGCCTAC AGCAGCAGCT CTGCTAAGGC CAGAGAGCAC GAACACGAAC CTGTCGACGA AGACTTCTGG TACGACAGCG AGGAGGAAGA AAGCTTTGAT GAGGAAAGCT TGATGGACGA CATGGACGAC CGTGAAGAGG ACGACGATGA AGAAGAGGAG GAAGACGACG ATGTTGATAT GGTAGCAAAG TAGAAAAGCT ATAAGAGCTT GCACGGTATC TAAGTTTTTT AATCTTTATG AATTCTAAGA TTTTTAGGCT TGTGGTACTT CCAATAACTT CATATCACCA TATGTTATTG TACTGAGATC AGAGTGGTTT TCCACGGTTT TAATTTCTTC TTTGTCTAAT TTCTCCTTGT TATGTTCCTC ATGTCGGTTA ATGTTCCTTA ATGAATCTTT CTATTGTTCC TTCCATATTA GTGGTTGTGG ATCTATTCCG GTCTCTTGCC GCAGTCGGCT TCCCATTGCA TCTTTTTGTT AAACTACACG TCATAAGCTT GTTTCGTCTA TCAGATACTT ATATACCCAG AAAATGTATA AGAAGATAAG
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Protein sequence | MSSKSAAAIL QRQFKELTDP KKAIPSFHIE LDDDNIFLWN IGIMVLNKDS MYHGGYFKGQ MRFPSDFPFA PPTFRFTPAI YHPNVYRDGR LCISILHQGG DPTSDEPDSE TWTPAQTVES VLISIVSLLE DPNVSSPANI DASVEFRKNP EAYKKKVLHE VERSKADIPE DFIMPESEFA AYSSSSAKAR EHEHEPVDED FWYDSEEEES FDEESLMDDM DDREEDDDEE EEEDDDVDMV AK
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