| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84718 |
|---|
| Symbol | ADE13 |
|---|
| ID | 4839942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | + |
|---|
| Start bp | 1141080 |
|---|
| End bp | 1142639 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640391257 |
|---|
| Product | 3-isopropylmalate dehydratase |
|---|
| Protein accession | XP_001385573 |
|---|
| Protein GI | 126138100 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0015] Adenylosuccinate lyase |
|---|
| TIGRFAM ID | [TIGR00928] adenylosuccinate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000783625 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0902341 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCCA ACTACGATAG TTACTCCACG CCATTATCTT CCAGATATGC TTCGGAAGAG
ATGTCCAAGA TCTTCTCCTT GAGAAACAGA TTCTCTACCT GGAGAAAGTT GTGGTACAAC
TTGGCCATTG CTGAAAAGGA AGTGGGCTTG ACTGTGATTT CGGACGAAGC CATTGCTCAG
ATGAGACAGC ACTTGGACAT CACCGATGAG GAGATTGCTG CTGCTTCTAA GGAAGAAGCT
ATTGTCAGAC ACGATGTCAT GGCTCATGTC CACGTTTTTG GTAACACCTG TCCTGAGGCT
GCTGGTATCA TCCACTTGGG TGCCACCTCT TGTTTCGTTA CCGACAATGC CGATTTGATC
TTCTTGAGAG ATGCCTACGA CGTCATCATC CCTAAGTTAG TCAATGTTAT CAACAGATTG
TCCAAATTCG CCTTGGAATA CAAGGACTTG CCAGTTTTGG GCTGGACCCA TTTCCAACCT
GCCCAATTGA CGACTGTGGG TAAGAGAGCC ACCTTATGGA TCCAGGAATT ATTATGGGAC
TTAAGAAATA TGGAAAGAGC CAGAAATGAC ATTGGATTGA GAGGTGTTAA GGGTACCACT
GGTACTCAGG CTTCATTCTT GTCGTTGTTC CACGGTGACC ATGACAAGGT TGAGGCATTG
GACCAGAGAG TCGTAGAATT GTTGGGTTTT GACCACGTCT ACCCAGTCAC TGGCCAGACC
TACTCAAGAA AGATTGACAT TGACGTTTTG TCTCCTTTGG CTTCTTTCGG TGCTTCTGCT
CACAAGTTTG CTACCGATAT CAGATTGTTG GCTAACTTGA AGGAAATCGA AGAGCCATTT
GAAAAGTCGC AGATTGGTTC TTCAGCCATG GCCTACAAAA GAAACCCTAT GAGATGTGAA
AGAGTGTGTT CCTTGGCCAG ACACATGGGT GGTTTGTTGA ACGATGCTAT CCAGACTGCT
TCTGTTCAAT GGTTCGAAAG AACCTTGGAC GATTCAGCCA TCAGAAGAAT ATCGCTTCCT
TCTGCGTTCT TGACTGCTGA TATCTTGTTG AGTACAATGC TCAACATCAC CAGTGGCTTG
GTGGTCTACC CAAAGGTCAT CGAAAGAAGA GTAAATTCGG AATTGCCATT CATGGCTACC
GAAAACATCA TCATGGCCAT GGTGGAAAAG GGTGGTTCCA GACAAGACTG TCACGAAGAG
ATCAGAGTGT TGTCTCACCA AGCTAGTGCT GTTGTCAAGC AAGAAGGTGG TGATAACGAC
TTGATCGATA GAGTCAAGAA GACCGAATAC TTCAAACCTA TCTGGGCCGA CTTGGAATCG
TTGTTGGATC CAAAGACTTT CGTCGGTAGG GCCCCTGAAC AGACGGAAAA GTTCGTCAAG
GTCGATGTTG CCAAGGCAAT CAAGCCATAC GAAAAGTACA TCACCAACGA AGCTGTTTCG
TTGAGTGTTT AGTTTGTTCT GGTGAATACT AATATGTTTT AATCACATTA TTTTCAATTC
TATCTCTCTA TCTTGTCTAT TGTATAAAGA TTAGCTACAA AAATTTAAAC GTGTTTGTTT
|
|---|
| Protein sequence | MSSNYDSYST PLSSRYASEE MSKIFSLRNR FSTWRKLWYN LAIAEKEVGL TVISDEAIAQ
MRQHLDITDE EIAAASKEEA IVRHDVMAHV HVFGNTCPEA AGIIHLGATS CFVTDNADLI
FLRDAYDVII PKLVNVINRL SKFALEYKDL PVLGWTHFQP AQLTTVGKRA TLWIQELLWD
LRNMERARND IGLRGVKGTT GTQASFLSLF HGDHDKVEAL DQRVVELLGF DHVYPVTGQT
YSRKIDIDVL SPLASFGASA HKFATDIRLL ANLKEIEEPF EKSQIGSSAM AYKRNPMRCE
RVCSLARHMG GLLNDAIQTA SVQWFERTLD DSAIRRISLP SAFLTADILL STMLNITSGL
VVYPKVIERR VNSELPFMAT ENIIMAMVEK GGSRQDCHEE IRVLSHQASA VVKQEGGDND
LIDRVKKTEY FKPIWADLES LLDPKTFVGR APEQTEKFVK VDVAKAIKPY EKYITNEAVS
LSV
|
|---|
| |