| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84655 |
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| Symbol | SMF1 |
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| ID | 4840158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 1509028 |
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| End bp | 1510982 |
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| Gene Length | 1955 bp |
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| Protein Length | 531 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640391473 |
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| Product | manganese transporter |
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| Protein accession | XP_001385640 |
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| Protein GI | 150866146 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
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| TIGRFAM ID | [TIGR01197] NRAMP (natural resistance-associated macrophage protein) metal ion transporters |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.047618 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.19959 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CAAAGAATAA CAACAGTGTG ATTGCATGCT TAAAGAACTG CTGGAAACTA GAAGTGCTAT
TTTCTCAAAT CAAAGCTGGA ATTCGATACT CTGAATCGCC AAATAATCAG CCCATATAGG
ATCAAGTATT GAGATACTAA GAACAAGGGC TTCATCTGAG GTTATCAACA TCCTATCCCA
TTCACATTCA CACATTCGCT ATCGAGTTCA ATAGTCTTGA CTTCCTTCTG AACATTTTTG
CATTCATATT CACTCATCAT ATTAGTATTT GAAAATGGTA GAGGGTCTGT CTAACAATAT
CATGGAGAAC TCTCCCCAGA CTCCTAACGA AAAGTCGCCA GACTATAACT GTTCCATCAA
GAATCAACCG CAACCGCATG CAAACGTTGG AGTGCGTATG AGAACTTCTC TCCGCAAGTA
TATGTCTTTT GTTGGCCCCG GGTTGCTTAT TTCAGTTGCT TACATGGATC CTGGTAACTA
TGCCACAGGC ATTACTGCTG GTGCTTCAAA CAGATACTCG TTACTTTTCT TCGTGTTTCT
CTCAAATATC ATTGCTATTT TCCTCCAATC ACTTTGTATC AAGTTGGGCT CGGTGACAGG
TTACGATTTG GCTAGATGCT GCCGTGAATA CTTGCCTCGC TGGTTAAACA TCATCCTTTG
GATTCTTGCG GAGTGTGCTA TTATTGCTAC AGATGTAGCC GAGGTTATTG GTTCCGCTAT
CGCCCTTAAT ATCTTATTGA AAGTGCCGTT ACCAGCCGGT GTAGTCATCA CTATTGTCGA
CGTTTTGTTC GTTCTTGCTG CTTACAGAAA CGACACTTCT TCGACAAAGT TCGTAAAAAT
GTTTGAATAT GCCGTAGGTT TGTTGGTCAT GGCAGTTGTT ATCTGTTTTG CTATTGAGCT
TTCGCAGATT CATGCCAATG CTGCACAAGT CTTCAGAGGC TTCGTCCCTT CGAAAGAGAT
GTTCGATGAC GGAGGCATGA CTATCGCCAC TTCTATCATT GGTTCCACCG TCATGATCCA
CAGTTTGTTC TTGGGTTCGG GATTAGTACA GCCAAGGTTG AGAGAATATG ACGTCGTTCA
TGGCCACGTC AACTTGAACG ACTTGTATGA CAATAGCAGT GACGAAGACG AGAAAGCAGC
AGCAAAATCT AAGCGCGATG TAGAGGCAGA CTACTTTTAC CATAAGTACA AACCTTCTTA
CCAGTCGATC AAGTACTCGT TAAAATATTC CATCATTGAG TTGACCTTGA CTTTGTTGAC
TTTGGCACTT TTCGTGAACC TGGCCATCTT AATTGTAGCT GGTTCCTCTT TGTATGACAC
TCCAGAAGCT GTGGATGCTG ACTTGTATAC TATCCACTAC TTACTTTCCA AGAACTTGGC
CCCTGTGGTG GGTACCATTT TCATGTTGGC ATTGTTGTTC AGTGGTCAGA GCGCAGGTAT
AGTATGTACC ATAGCTGGGC AAATAGTCAG TGAAGGTCAC ATCAATTGGA CTGTCAAGCC
ATGGATGAGA AGATTAATCA CTAGAGCTAT TTCTATCATT CCATGCTTAA TTATCTCGCT
TTGCATAGGA CGTAATGGTT TAAGTACGGC TTTGAACGTG TCCCAGATTG TCATTTCAAT
TCTATTGCCT CCTTTGACCG CTCCTTTAAT CTACTTTACT TGTAAGAAGA CGATCATGAA
GGTAGAACTC CCAGAGGAAA TGAACACAGA AGGTATCAAG GGCATTGTAG AGGATAAGGA
TACAAAAAAG AGATACAAAT ACTTGGGAAA CAACTGGATC ACTGCAGTGA TTGCAGTTTT
GATCTGGCTC TTCATCTCGG TCTTGAACGT GTATGCCATA GTGGATATGG CCATGCACGG
CGTACAATAG AGAGTTGTCA TTTACATTTT ATATTTATTG GGTAATACAA GGAATACGAG
AGTATTTCAT ACAGATCAAT ACATAGAATC TAACG
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| Protein sequence | MVEGSSNNIM ENSPQTPNEK SPDYNCSIKN QPQPHANVGV RMRTSLRKYM SFVGPGLLIS
VAYMDPGNYA TGITAGASNR YSLLFFVFLS NIIAIFLQSL CIKLGSVTGY DLARCCREYL
PRWLNIILWI LAECAIIATD VAEVIGSAIA LNILLKVPLP AGVVITIVDV LFVLAAYRND
TSSTKFVKMF EYAVGLLVMA VVICFAIELS QIHANAAQVF RGFVPSKEMF DDGGMTIATS
IIGSTVMIHS LFLGSGLVQP RLREYDVVHG HVNLNDLYDN SSDEDEKAAA KSKRDVEADY
FYHKYKPSYQ SIKYSLKYSI IELTLTLLTL ALFVNSAILI VAGSSLYDTP EAVDADLYTI
HYLLSKNLAP VVGTIFMLAL LFSGQSAGIV CTIAGQIVSE GHINWTVKPW MRRLITRAIS
IIPCLIISLC IGRNGLSTAL NVSQIVISIL LPPLTAPLIY FTCKKTIMKV ELPEEMNTEG
IKGIVEDKDT KKRYKYLGNN WITAVIAVLI WLFISVLNVY AIVDMAMHGV Q
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