| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84407 |
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| Symbol | YHI0 |
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| ID | 4840393 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 1354265 |
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| End bp | 1356400 |
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| Gene Length | 2136 bp |
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| Protein Length | 682 aa |
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| Translation table | 12 |
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| GC content | 47% |
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| IMG OID | 640391708 |
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| Product | proline-tRNA ligase |
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| Protein accession | XP_001385956 |
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| Protein GI | 150866378 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00408] prolyl-tRNA synthetase, family I |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTTAG CTTCCTCATT GGCTGCCTTG TCATTGGCCA CCGTGGCCGA CTCGTCTGCT
GTAGAAACCA AGACGGTCGT TTTCAAGCCC AAGACTGCCA AAACTGCTGT TCCCGTGCCA
GTTCTTCTTT TCGCTCTTCA ATCCACCGAA ACACCCTCCA ACGTTCTCGC CAAAGCTGCT
GCTGTCAAGG AGCCTCGTGT GGCCAAAGAA GACTTGGTTG TCGAATTCTT CAAGGTCTCC
CCTAAAGAGG TCTCAATCGC TAACTTGGAC AAGCTGTTGG CTGGCAAAAT CAAGATCGTA
TTGGACTCCC AAATTGCCAA CGCCGATGAC GAATTGGTTC TTTCACTTGT CACCGAGTCA
GGAGCCGCTG CCCTCAAAGC TTCCACTGCT GTCGAATACT TGAAGTCAAC TGGTATCGAA
ACTGTCGTTG TTGACTTTGC TGCTGAAGCT GCTGCACTTG CTTCTGGTTC TGTTGCTGCT
GAAAAGCCAG AGTCCAAGAA GAATTCCGCA AAGAAAGACG CTAAGAAGGA TGCTGCTTTG
GAAGACGCCA AGTTGATTGG TATCACTGTC GACAAGGCCA AGGACTTCTC GTCTTGGTAC
TCACAAGTCG TCACTAAAGG TGAGATGTTG GACTACTACG ATGTCTCTGG TTGTTACATC
TTGAGACCAA ATTCCTATGC TGTCTGGGAA ACCATCCAGG ATTGGTTCAA TGTGCACATC
AAGAAGATGG GCGTCCAGAA CTCTTACTTC CCCATGTTTG TCTCGCAAAG AGTGTTGGAA
AAGGAAAAGG ACCATATTGA GGGATTTGCT CCCGAAGTCG CCTGGGTAAC CAGAGCCGGA
AACTCGGAAT TGGACGAACA CATCGCCATT AGACCAACAT CCGAAACCGT CATGTACCCA
TACTACTCCA AATGGATCCG TTCCCACAGA GACTTGCCAT TGAAGTTGAA CCAATGGAAC
TCAGTCGTTA GATGGGAATT CAAGCACCCA CAACCATTCT TGAGAACCCG TGAATTCTTG
TGGCAGGAGG GTCATACTGC CCATTTGACT AAGGAAGAAG CTGCTAAGGA GGTCGATGAG
ATTCTCGACT TGTACGCGCG CATTTACGAA GAGTTATTGG CTGTTCCAGT TGTCAAAGGT
AAAAAGACCG AAAACGAGAA GTTTGCTGGT GGTGATTACA CCACTACCGT TGAAGGTTTC
ATTGCTGCCA CTGGAAGAGG TATTCAAGGT GCTACTTCGC ACCACTTGGG AACTAACTTC
TCCAAGATGT TCAACATCTC GGTCGAGAAC CCTGATGGGG CTGATAAGCC AAGAGTGTTT
GCCTTCCAAA ACTCTTGGGG TTTATCCACT CGTGTTATTG GTGTGATGGT GATGACCCAT
TCTGATAACA AGGGGTTGGT CTTGCCTCCA AGAGTAGCTC AAACCCAAGC CGTTGTTATT
CCAGTTGGTT TGACCTCAAA GACCACTGAT GAACAAAGAA AGGCCATCAA CGACGGTGCT
GCTGACATTG AAGCCAGATT GAAGGCTGTC GATGTTAGAG CTATCGGAGA CTACAGAGAC
ATTTACACTC CAGGTTGGAA GTTTGCTGAA TGGGAATTGA AGGGTGTTCC ATTGCGTATT
GAGTTTGGAC CAAAGGACTT GTCTTCTGAA CAAGCTACTG TGGTTAGACG TGACAACGGT
GCCAAGTACA CTGTCAAGTT GGCTGAATTG GAAACGCGCA TTCCTGAGAT ATTGGAAGAG
ATGCAAAAGG GTTTGTTGGA AAAGGCTAGA AATGACTTCA ACGAACACCG TATTGTTGTT
GAAGACTGGA AGGACTTTGT TCCTACATTG AACTCCAAGA ACGTGATTGT TTCTCCATGG
TGTGGAGACA GTGAGTGTGA AGATGACATC AAGGACTCTT CTGCCACCAA GGACGATGGA
GAAGAAGAAG AAGTCGACGA AAAGGCTCCA TCCATGGGTG CCAAGTCGTT GTGTATTCCT
AAGGAACAGC CTGAGTTGAA GCCAGGCCAA AAGTGTGTGA AGTGTGACAA GCCTGCTATC
ACCTACTGTA TGTTTGGTAG ATCATACTAA TCCTGTAAGT AATAATCTTG TTGTTTGTAT
CCAGACTACG TGGCATGAAT AAACGATGTA TAGAAT
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| Protein sequence | MALASSLAAL SLATVADSSA VETKTVVFKP KTAKTAVPVP VLLFALQSTE TPSNVLAKAA
AVKEPRVAKE DLVVEFFKVS PKEVSIANLD KSLAGKIKIV LDSQIANADD ELVLSLVTES
GAAALKASTA VEYLKSTGIE TVVVDFAAEA AALASGSSKK NSAKKDAKKD AALEDAKLIG
ITVDKAKDFS SWYSQVVTKG EMLDYYDVSG CYILRPNSYA VWETIQDWFN VHIKKMGVQN
SYFPMFVSQR VLEKEKDHIE GFAPEVAWVT RAGNSELDEH IAIRPTSETV MYPYYSKWIR
SHRDLPLKLN QWNSVVRWEF KHPQPFLRTR EFLWQEGHTA HLTKEEAAKE VDEILDLYAR
IYEELLAVPV VKGKKTENEK FAGGDYTTTV EGFIAATGRG IQGATSHHLG TNFSKMFNIS
VENPDGADKP RVFAFQNSWG LSTRVIGVMV MTHSDNKGLV LPPRVAQTQA VVIPVGLTSK
TTDEQRKAIN DGAADIEARL KAVDVRAIGD YRDIYTPGWK FAEWELKGVP LRIEFGPKDL
SSEQATVVRR DNGAKYTVKL AELETRIPEI LEEMQKGLLE KARNDFNEHR IVVEDWKDFV
PTLNSKNVIV SPWCGDSECE DDIKDSSATK DDGEEEEVDE KAPSMGAKSL CIPKEQPELK
PGQKCVKCDK PAITYCMFGR SY
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