| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84331 |
|---|
| Symbol | LCB2 |
|---|
| ID | 4839741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | + |
|---|
| Start bp | 71748 |
|---|
| End bp | 73849 |
|---|
| Gene Length | 2102 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640391056 |
|---|
| Product | palmitoyl transferase |
|---|
| Protein accession | XP_001385347 |
|---|
| Protein GI | 126137648 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TGAAAGATAT TTCTCCGAAC AGTGGGAGTT GCAAATTCCA GTTTCAGTCT TTTTCAGGAT
TTTTCTCTCT TTTTGTAGGG TATTCTTTTT GTTTTTGACA CAGCGAAAGG AGACCTCATT
GCATACATAT CTATTCATTC GCTCTCAGAC GAAGTCATTC CATTCAGTCC GGACAATTCA
CACTCGTTTT GTACTCGTAG AGCCATATCC AACTTATAGC ACTTGAATCT TACTAATCTT
CCGGCTTCTT TTGATACTTA TTTTTCAGCA TAATGGCTAG GAAGGAAAGA GTGTTGACAG
CCAACATCCC CAACGCTGCA CCCGATGACA GACCGCAAGA AGTTCTAGAT GAATTGGAAT
ATGGAAAATT GTCTACCAAG CGGTATTTGT ATGTTTCCAA ACATCCAGTG GGTGAACCTT
TACCTACTCC TATAGATGAT GAACCACCAT ATATTATCTA TCTTGCAACC TATATAAGTT
ATCTTATCTT GATCATAATA GGTCACATTC GAGACTTCTT TGGCAAGTTT TTCAAGCCTA
AGGAGTATGC TGATTTGATC GAGAAAGACG GCTACGCTCC TTGGTACGAC GGTTTTGAGA
GTTTCTATGT ACGTCGTTTG AAGATCAGAA TCGACGATTG TTTTGCCAGA CCTATCCACG
GAGCACCCGG TCGTTACGTC AAATGTTTTA ACAGAATCAG ACACGGTAAA ACCGGCTATC
TTTACGATGG AACTTCCAAT GAGTGTTTGA ACTTATCTTC TTACAACTAC TTGGGTTTTG
CTCAGTCCAA CGGAGTGTGT ACTGATTACG CCTTGGGTTG TGTTGATGAC TACGGCACTT
CTGCCTGTTC TCCTAGAGCC ATTTCGGGAA CCACTGACTT GCACCAAAAG TGTGAACGGG
TCATAGCTGA CTTTGTCGGA AAGGAGGACG CTATTATTGT GTCGCAAGGG TATGGTACGA
ATGCCAACTT GTTTTCGTCT ATTGCTGATT CTAAGACGTT GGTCATCTCT GACGAGTTGA
ACCATGCTTC TATTAGATTC GGAATCAGAT TGTCCGGTGC TTCCGTCAAG GTCTTCAAGC
ATAATGACAC GAAGGACTTA GAAAAGTTAA TCAGAAACCA GATTGCTCAA GGTCAGCCAA
AGACCCACCG TCCCTGGAAA AAGATCATCA TTGCCGTAGA AGGGTTGTAC TCCATGGAAG
GAAACATGTG TAACTTGCCT GAAATAGTAG AAATCAAAGA CAAATACAAA TGCTACTTGT
TTGTCGATGA GGCTCACTCC ATTGGTGCCT TAGGTCCTGG TGGAAGAGGT ATCTGTGACT
ATTTCTCGGT AGATCCGGCT AGAGTTGACT TGTTGATGGG CACTTTTACC AAGTCGTTTG
GTGCTACTGG TGGTTACATT GCTGGGGACA AGTACTTGAT TGAAAAGATG AGAACCAACT
ACATCACCCA GGTGTACTCT GAAAGTGTTC CACCTGCAGT GATGGGACAG ATCATCTCGT
CGTTGAGCGT TATTGAAGGT ACTTTGAATC CAGGTGAGGG ACAAGAAAGA TTGCAGAGAA
TTGCCTTCAA TTCGCGTTAT TTGAGATTGG GATTAAAGAA ATTGGGTTTC ATTGTCTATG
GTGCTGACGA CTCTCCGGTT ATCCCTGTCT TGTTGTTTTT GCCTGCCAAG ATGCCAGCTG
TCTCGAGAAT GTTGTACGAT ATGAAGATTG CCGTTGTTAT CGTCAGTTAC CCTGCCACAC
CTTTGATATC TGGTAGAGCC AGATTGTGTG TCAGTGCAGC TTTGACCAAA GAAGACTTGG
ACTACGTTCT TCAAAAGTTC AACGAAGTCG GAGACCAGAT TTTCCTCAAG TTTAGTAGCG
GTATCGCTGG AGGCTCGAAG GTTGAAGGCG AGCCACCCAG ATGGGCCATT GAAGACGTTC
TTGCTACCAA CGTCGAGGAT TGTAAAAAGC CAAAGCTAGG ATACTTCAAC TGAAATTGGC
GATTTCTCCC ATCAATGTAC ATATATATAC CACCACACGC ATACAATATT GCTACTGTTT
TAATAAGCAC TTCTAATTAC AGTTAACTAA TTTATAATAA TCATAATGTC ATACAAATAT
AC
|
|---|
| Protein sequence | MARKERVLTA NIPNAAPDDR PQEVLDELEY GKLSTKRYLY VSKHPVGEPL PTPIDDEPPY
IIYLATYISY LILIIIGHIR DFFGKFFKPK EYADLIEKDG YAPWYDGFES FYVRRLKIRI
DDCFARPIHG APGRYVKCFN RIRHGKTGYL YDGTSNECLN LSSYNYLGFA QSNGVCTDYA
LGCVDDYGTS ACSPRAISGT TDLHQKCERV IADFVGKEDA IIVSQGYGTN ANLFSSIADS
KTLVISDELN HASIRFGIRL SGASVKVFKH NDTKDLEKLI RNQIAQGQPK THRPWKKIII
AVEGLYSMEG NMCNLPEIVE IKDKYKCYLF VDEAHSIGAL GPGGRGICDY FSVDPARVDL
LMGTFTKSFG ATGGYIAGDK YLIEKMRTNY ITQVYSESVP PAVMGQIISS LSVIEGTLNP
GEGQERLQRI AFNSRYLRLG LKKLGFIVYG ADDSPVIPVL LFLPAKMPAV SRMLYDMKIA
VVIVSYPATP LISGRARLCV SAALTKEDLD YVLQKFNEVG DQIFLKFSSG IAGGSKVEGE
PPRWAIEDVL ATNVEDCKKP KLGYFN
|
|---|
| |