| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_78746 |
|---|
| Symbol | PDE2 |
|---|
| ID | 4840082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | + |
|---|
| Start bp | 360811 |
|---|
| End bp | 363102 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640391397 |
|---|
| Product | nucleotide phosphodiesterase |
|---|
| Protein accession | XP_001385419 |
|---|
| Protein GI | 150865978 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0970062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0386591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATTATTCTTT TTGATATTGT TTTCTTCTCG TTACCACATC TGAGGTGTAC TTGTTGCAAC
AGTACCAATT CCTGCTACCT GTTCGCACTC TCAACCCTCA AACGAGTGTA CTACTGATCT
TCGCTGGCTG TTGCCCGAAC TTTCCTATCT GAAGATAACA GTTGCCAACA AGCCCACTAC
ACAGTATTGA TTTTTGCTAT ACTTTGGTGC TTTAACGAAA GATACAGAGC TATAGGGCCA
CAAACAGTTT ATACCTAGAC CGTGCTACTG ATCATAGTTC ATTGTTTAGT GTACTCTGGT
ATTCAATAGA GACTTGCTGT GATTCATATT ACAACTCACA TTCTCTCATA TTTCCACTTC
CATTGTTTGC TCAACAGAAA ATCTTGCCAT ACATAGTAAT CTTAAGCCCA CATCACTATC
ATGGCTGAGA TCTTGTCCTT AGTTCCAGAT ACTCCTGGAG CTCGTGCCTT CAACCTCCAC
CACAGATCGT TCAAGTACTA CCAGAACTTC CGCGATATAG TTGCCTATTT GTTTTCCAAG
GGAAACAATG AGGCAGACAC AAACTACCCC ATAGTTGTTG TTGTAGATGA AACCGAAGGC
GGAACTTCTA CAGCCACTTC ATTGCATGAG TTGTCTTTTT CAGACAAGAA GTTGGTGCTC
AAGTATTTCT TCATCCACCA GAATATAATC ATAGTGCTGC CCCGAGATCT CAATCCTGAC
TATATCAACA ACAAGATTAC TCAAGTGACG AATTTGATCA CGAACCGTAT CTCTCGTGTA
GAGACATGGA CGGGAACAGG CACAAACTCA ATCAACGACT TCTACTCGCA AGAGGAAGAC
TTGGAGCTCG GGGAAGTCAT TTCCACCATG TCGTTTCTCT TGAGCAATAA CACGAACAAA
TCGTCGCAAA CCACCGAGCA TATCATCTAC CTCAAAGACT TGATCATTGC AGATATCGAT
TTCAAGAGTT TGCTTTCGAA CCATACGCCT GAGCATTTGG CCCGTTTATG CCATGCTGTT
GGCCACTGGG CATTCCCGGC ACACGAGTTA TCAAACGACG ACTTGGTATA CTGTGTTTTC
TTGATGTTCA AATATGCCTT GAAGCAAGTG AAAAAGAATC ACAGCGGAAG CTTGTTGCAT
ATACCTACAT CTAACGAATT GTTGGCATTT GTCTTCATGG TAAGAGACAC TTACAAGAAT
GGCAACCCGT TCCACAACTT TCGTCATGCT GTTGATGTAT TACAGGCATG TTTCCACTTT
TTGATCAGAT TGGACTGTTT GCCTGTCTTC AAGCAGTTGA AGAACGACCC TAAGTCCGAC
GAGCTTGCAT TTCTCCAAAC CAAGTTGGCG GACACAGAGG ATCAGGAGTT GGTTCCCATA
ATCGGACAGC CTGATTATTT TGCATATGTT CTGACGTCAA AGACAACTTC ACCCAACCCA
ACTTTAAAAG CGGTATTTCA GGACCACACG TCAAACTCGA GTTCTCCAGC TCACTCTCCC
AACCACTTAA ACCATTTGCA GACTCTTGGT TTGTTGGTGG CCGCATTAGG TCATGATGTT
GGTCATCCAG GTGTCACCAA TGCATTCATG ATCAAGAATT TTGCACCTAC ATCAATCTTG
TTCAATGACA GGTCGGTTTT GGAGCTGTTC CATTCGTCTG TCTTCATCAA CAAGATCTTA
GCCGTCAACT GGCCCTCGTT GTTGACTGTG TTCACCGAAT CTGGAGAGTC AGTTTCTGGT
TTGTCGCTCC GAGAAATCAT CATATCAAGC ATATTGGCAA CAGACATGGC TGAGCACTTC
GAATATATCG ATAGGTTAAA GAACTTGAAG TCACATGATT TCATCAAGCA CAACAACCGG
GTCAAATTGA TCTCGTCGCT TTTGATCAAG TGTGCTGATA TCTCGAATGT CACTCGTCCG
TTGAGAGTGT CTTCTCAATG GGCCATGGTT TTAGGTAGAG AATTCGACGA AGTGGCCATG
CTTGAAAAGA AGATTACCCT GGAAGACCAC CTTGGAGACT TAGACACTGC TAAGGACTTG
ACCTACACCA AGGTGCCGTT GAGCTTGAAC GAGATCTTGA AGTCTACACC AAACTTGCAT
AAGGGCCAGA TCTTTTTCAT CAATACTTTT GCAGAGAATT TGTTCAGCAA CATCGCCGAG
TTGTTGCCGG AGTTAAAATA CACCTGCGAT ATCATCCGCG AGAATAAGGA ATTTTGGGTC
AACCGGGATA AGGCATAGTT AGCTAATGTA CTATAGATGG ATATACAACA ATAATATGAT
ATAGGTTATG TC
|
|---|
| Protein sequence | MAEILSLVPD TPGARAFNLH HRSFKYYQNF RDIVAYLFSK GNNEADTNYP IVVVVDETEG
GTSTATSLHE LSFSDKKLVL KYFFIHQNII IVSPRDLNPD YINNKITQVT NLITNRISRV
ETWTGTGTNS INDFYSQEED LELGEVISTM SFLLSNNTNK SSQTTEHIIY LKDLIIADID
FKSLLSNHTP EHLARLCHAV GHWAFPAHEL SNDDLVYCVF LMFKYALKQV KKNHSGSLLH
IPTSNELLAF VFMVRDTYKN GNPFHNFRHA VDVLQACFHF LIRLDCLPVF KQLKNDPKSD
ELAFLQTNSI ILHISPAHSP NHLNHLQTLG LLVAALGHDV GHPGVTNAFM IKNFAPTSIL
FNDRSVLESF HSSVFINKIL AVNWPSLLTV FTESGESVSG LSLREIIISS ILATDMAEHF
EYIDRLKNLK SHDFIKHNNR VKLISSLLIK CADISNVTRP LRVSSQWAMV LGREFDEVAM
LEKKITSEDH LGDLDTAKDL TYTKVPLSLN EILKSTPNLH KGQIFFINTF AENLFSNIAE
LLPELKYTCD IIRENKEFWV NRDKA
|
|---|
| |