Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_68190 |
Symbol | |
ID | 4840147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | - |
Start bp | 1450472 |
End bp | 1451183 |
Gene Length | 712 bp |
Protein Length | 166 aa |
Translation table | 12 |
GC content | 43% |
IMG OID | 640391462 |
Product | predicted protein |
Protein accession | XP_001385976 |
Protein GI | 126138906 |
COG category | [K] Transcription |
COG ID | [COG1958] Small nuclear ribonucleoprotein (snRNP) homolog |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.502273 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | CGGCTATTGC TGTTCCTTTT CTGTTAGCTG TTCTCCAATT ACCTGAACCT CTGGACTTTA GTTTCGGAAT TTCGCTTGCT AGACGTGACT ATTTCTAAAA TGGAGAAAGA CGCTTTGGCT CCCAACGTCG AAGACTTGTA TTTGGAGTCG TATGCCTTCA CCACCGCCGC CGCCATTGTA GGCTCGGTAG ACCGAAAGAT ATTTGTGTTG TTGAGAGATG GCAGAAACCT CTTCGGCATT TTGCGGACTT TTGACCAATT TGCCAACTTG GTCTTGCAAG ACACTGTAGA GAGAATATAC TTGGATAACG ACAAAAAACA GCCCGAGCCA CAAGAAGACG GCTCCATAGA GCAGAAGCGC TTTGGTCAAG CCTACAGAGG CATTTTCATG GTCAGAGGCG AAAACGTAGT CATGATGGGA GAACTTGATA TCGATAGAGA AGATGACCAT TTGGCAGAAT TGCAGCAGAT TCCATTTGAA GAAGCCGAAA AGGAGTTGGA AAAGTCCCAC GCTGAAACAA TCCGTAACGA GAAAACCAGA TCTAAGCAGT TTTTGGCTAA GGGGCTCATC AACGACTTTG TCAAGTCGGA CTTGTACTGA GACTGTTCAC TTCTAGCATG TATGACTTAC GTTTATTCAT TGATTGTATA GTATTTTTAA TAAAAGCATT GCTTTGGTTG AATGTGGAAT TCATAGAAAG TTGCATGAGA TT
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Protein sequence | MEKDALAPNV EDLYLESYAF TTAAAIVGSV DRKIFVLLRD GRNLFGILRT FDQFANLVLQ DTVERIYLDN DKKQPEPQED GSIEQKRFGQ AYRGIFMVRG ENVVMMGELD IDREDDHLAE LQQIPFEEAE KELEKSHAET IRNEKTRSKQ FLAKGLINDF VKSDLY
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