| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_68096 |
|---|
| Symbol | |
|---|
| ID | 4840057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | - |
|---|
| Start bp | 823937 |
|---|
| End bp | 825898 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640391372 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001385858 |
|---|
| Protein GI | 150866309 |
|---|
| COG category | [A] RNA processing and modification
[D] Cell cycle control, cell division, chromosome partitioning
[K] Transcription |
|---|
| COG ID | [COG5147] Myb superfamily proteins, including transcription factors and mRNA splicing factors |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0298848 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CAACCATCTA CCATAACGGC TGCAAAAAAT ACCAATTGGC TGCAACATGG ACGAGCAGCA
GGAAATCGGA GGAGCACATG CTCTCCTCCA ACTAGGCTCA AAGCAGAAGG ATGATGGAAT
AGACGACAGC ATTGATGCAA TCGGCAATAA TGAAAACAGC AATGTCAATG AAGATGTAGA
TGACGAAGGA GACCTTTCAG ACTCGAAGAA CCAGCAGATT AATGATGCAG TAGAGGCTGC
TGTCATGAGG TATGTGGGAG GAACTTTGGA CTCTGCAGAG CATGAGAGCA AAAGAAGCAA
ACGGAAGATC CACGATGAGA TCATCAACAA TATCCACGAG TTCAACCAAT GGACTGGATT
CTTAGAAGAA AATATCAGCG ACCATGGCAA CGAGGACTAC GATGCTTATA CGTCTCAACA
GCAGTCTCAG CCGCTCCATC TGAACAAAAG AAGCAAAGGA AAGAAAAGAA GAACTCAACT
GGGAACAAGC GACATCGATC CAGAACTCGA GGCTTTAGGC ACAACTGAAC ACGACCAATT
AGTAGAGGCA GCAATAATTG ATGCCAGAGA ACTTGCCAGA CACATCAATG AACAGGGAGC
CGGAACTGGG AACCTAAATC TCAGCCACCA CCAACAGCAC GCTGGATCTG ACTCAATCAA
TGCGATTACT CAACTTGCTC AGGCTGCTAC ATCGTTATCC GAAACAAAGA AAGCAAAACT
CAAGAGAAAA GATGGGGAGT CATACCAGAT GAAGAACATT GCCTTACGAC CCAAGTTCAA
CAACTTGACC AGTGTAGAAA CTCTCATAGA GGAAGCCTCG GCGCAAGCCT GTGAATGGTT
CAATTCCCTA CCTGACACTA CGGGTAAAGG TCCACGTATG TTTTCGGCAG AAGAGATGAG
TGCAGTAGAC CATTTCGTAG CAGGTTATTG CCATTTGAAC AAATGGACAA GAGAAGATGT
GTGTAACAGA GTGTGGTCCA ACGAGAGAAA GAAAGACAAT TTCTGGGAGT CTTTAGTACG
AGTACTACCA TACAGATCCA GAGCTTCTGT GTACAAGCAT GTGAGGAGAA TCTACCATGT
GTTTGACGTC AGAGCAAAGT GGACAGAGGA AGATGATGCC TTGCTTAAGA AACTTGCACT
TACACATGAG GGTAAATGGA AACAAATTGG AGAAGCTATG GGTAGAATGC CGGAAGATTG
CCGTGACAGG TGGAGAAATT ACGTCAAGTG TGGAGACAAC AGAACATCAA ACCAATGGTC
ACAAGATGAA GAGAACGCCC TTAAGCAGAT CGTCACTGAT ATGTTTCAAC AATCTGGAAA
CAAAGAGTAT GCGTCTATTA ATTGGACCGT TGTTAGTGAA AGAATGAATG GAACCAGATC
TCGTATTCAG TGTCGTTACA AATGGAACAA GTTGGTAAAG AGGGAAACTG CTCTTCGTGC
AACGTACATG AATTCCGACA CAAAACTCTG GATGCTCAGA AAACTCCAGA GCTCTGGCTG
GGATTCTGTT GATAGTGTCG ATTGGACTGA AGTAGCCCGT TTGCATAGGG AAGAGAATGT
TAAGCAGGAT GAGAATGGCT ACCAGTGGGA TGCGCCAGAT TTCAAGGCTA GTTTTGAGAA
GATGAGGTCA GAAGTGAGAG ACCACAAGAG GCTTTCATTT GTTACCATTT TGATGCGTTT
GATTGAGGAT TTGGAAGGAC ATCCAAAGCT TATAGCTCAA CATTTGAGAG AAAACAAGGA
CAACAGTAAC AAGCTCTACT ACGACCGCCA AAACAAGACC AAGAACGACA AAATAGTTGA
TCCAAACGAT CCTGAGTCAA TAGCAACAGC AGCTGTTGCT GCGGTCTCGT CAGGTGTAGA
CGGTGTTGAT GCCCAGCAAC AGGCATATAG CTTATGGCGA TAGAGGCTAA TTTCTTAATC
TAGTTGTACG TATTGATATA CTTGTAAATA TAGAGTTACA TT
|
|---|
| Protein sequence | MDEQQEIGGA HALLQLGSKQ KDDGIDDSID AIGNNENSNV NEDVDDEGDL SDSKNQQIND
AVEAAVMRYV GGTLDSAEHE SKRSKRKIHD EIINNIHEFN QWTGFLEENI SDHGNEDYDA
YTSQQQSQPL HSNKRSKGKK RRTQSGTSDI DPELEALGTT EHDQLVEAAI IDARELARHI
NEQGAGTGNL NLSHHQQHAG SDSINAITQL AQAATSLSET KKAKLKRKDG ESYQMKNIAL
RPKFNNLTSV ETLIEEASAQ ACEWFNSLPD TTGKGPRMFS AEEMSAVDHF VAGYCHLNKW
TREDVCNRVW SNERKKDNFW ESLVRVLPYR SRASVYKHVR RIYHVFDVRA KWTEEDDALL
KKLALTHEGK WKQIGEAMGR MPEDCRDRWR NYVKCGDNRT SNQWSQDEEN ALKQIVTDMF
QQSGNKEYAS INWTVVSERM NGTRSRIQCR YKWNKLVKRE TALRATYMNS DTKLWMLRKL
QSSGWDSVDS VDWTEVARLH REENVKQDEN GYQWDAPDFK ASFEKMRSEV RDHKRLSFVT
ILMLDPNDPE SIATAAVAAV SSGVDGVDAQ QQAYSLWR
|
|---|
| |