| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65910 |
|---|
| Symbol | RPN4 |
|---|
| ID | 4839779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | - |
|---|
| Start bp | 614320 |
|---|
| End bp | 616001 |
|---|
| Gene Length | 1682 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640391094 |
|---|
| Product | zf-C2H2 Zinc finger, C2H2 type |
|---|
| Protein accession | XP_001385813 |
|---|
| Protein GI | 150866273 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCA TCGCCGTGTT TCCTCCCTTG AAGAGATCCA TCACAGACAT CATGGACGAG
GAACTCTACC ACATCCCCAA CTCCCCCATC CAGTTCAGCT CGCGCAACGC CACCCAGCCC
CAGACGCAGA CGCAGCAGAA CCAGAACCAG TCACAGCTCT TTTCGGGTTT CAAATCGATC
AACTCGTCGC CGGCTTTGGC CCACAACACC TTGTTCATAC ATAACGCCGT CAACGGCTCC
AGCTCGTCGT TGAATGCGTC CACCACTGAT AGTTTCTTGG ACCAGTACGT GTACTCGAAC
AATCTCAACG CCACATCTTC CATCAACTCG TCGACAAACG TAAGCACCGC AAATGCCAAC
AGCAATCACG GCAGTAACGT GAATACAAAC CCTGCTAACT TCGACGCCAT GGACGTTGAC
GAAGCGTTCA ACACCCCCAG TCTATTTGTC AGCCCCTTTA CCGACTACGG CAATCCAGAC
TCATCGCTTC TCACCAACAA CCAAATCAAC CCCTTCTCGT TCGTGAGGCC CCAGCAGTTA
CAGAAACAAG CCCCTCCTCC TCTTCCACAG GCTTTCCCCG CTCGTCCCAC CAGAAGAAGA
CATATCACAA CCTTAGACGA TGACTCATCG CTTCGCTCTT CTACCAAGAA GGAAGACGAC
TACTTATTGT TTAACCCCGA CATCCAGCCC TCGCACCTCA TCAACAACAA GTCGTTCTTC
AACGACGATT ACTTGTTTGT GCCCAACAGT CAGCAGTACG ACCTTGACAA CTCAAACAAC
GGCACCACTG GCACAGTAGC CAACCTTGCA GCCAACGGGA TTATTCCAGG CTACGAAAAC
GACTATTTGC TTGTGGATGA CTTTGACGAA GAGATCGAAG CCGATTTGTC AGATGACGAG
GAAGATGACG ACAACTACTT TCATTTTGAC GACGACTTGG ACGACCTTGT GATGAACAGC
AACGAATACC CTGAAGACAA CATTAACATC AACGTCAACT TGATGGACAT GGACGACTAC
TTGAAGAACA CAAGCAGCAC CAATAACAGT AATAATATAA CCGATGTAGA TCCAGCCGAA
ACCATCAGAT TGAACAAGAA TGACGTGATG AACGGTGGCT ACATTGACGT TAAGCAGGAC
AAGATCGCAC AATCTCACGA AATCTCTTCG CATGAAATTG ACCACGAGGA TGACATTGAC
GAACTTGAAC TTGAAGACGA AGAATTTGAC GACAGAAGAC ATTCGACGAA GTCGTTTGCC
CATAAGTCGG CAGCCGAAAT ATCCGCCAAT AACCCCAACC ACCAGTGCGA CTTGATCAAT
CCATTGACGG GAGTCCCTTG CAACAAGCAA TTCTCCAGAC CTTACGATTT GATTAGACAT
CAAGAGACGA TCCATGCTTC GAAGAAGAAG ATCTTTAGGT GTGTCATTTG TGAAGGTAGA
GCCAACGGGG GTCCAGGTAA CGGAAAACTG AAGACATTCT CCAGAGGCGA TGCTTTATCC
AGACACATCA AAGTGAAACA TGGATTGGTA GGTAAAGAGG CGATTGACAT CATCAATGCC
GCTAAAGAGA ATGTAGAGTA TGTGAGCGTA TAATGATTTT GGTTTGGTTT ATTTGGTTTT
TTGGAGTTCT TGTACATAGT CTTCTACATC TTATATATAG CATAATATAA TCTTAATGAT
AG
|
|---|
| Protein sequence | MTSIAVFPPL KRSITDIMDE ELYHIPNSPI QFSSRNATQP QTQTQQNQNQ SQLFSGFKSI
NSSPALAHNT LFIHNAVNGS SSSLNASTTD SFLDQYVYSN NLNATSSINS STNVSTANAN
SNHGSNVNTN PANFDAMDVD EAFNTPSLFV SPFTDYGNPD SSLLTNNQIN PFSFAFPARP
TRRRHITTLD DDSSLRSSTK KEDDYLLFNP DIQPSHLINN KSFFNDDYLF VPNIANLAAN
GIIPGYENDY LLVDDFDEEI EADLSDDEED DDNYFHFDDD LDDLVMNSNE YPEDNININV
NLMDMDDYLK NTSSTNNNPA ETIRLNKNDV MNGGYIDVKQ DKIAQSHEIS SHEIDHEDDI
DELELEDEEF DDRRHSTKSF AHKSAAEISA NNPNHQCDLI NPLTGVPCNK QFSRPYDLIR
HQETIHASKK KIFRCVICEG RANGGPGNGK SKTFSRGDAL SRHIKVKHGL VGKEAIDIIN
AAKENVEYVS V
|
|---|
| |