| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_62786 |
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| Symbol | PRP40 |
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| ID | 4840034 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 940708 |
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| End bp | 942162 |
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| Gene Length | 1455 bp |
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| Protein Length | 478 aa |
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| Translation table | 12 |
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| GC content | 38% |
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| IMG OID | 640391349 |
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| Product | pre-mRNA processing protein |
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| Protein accession | XP_001385539 |
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| Protein GI | 150866066 |
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| COG category | [A] RNA processing and modification |
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| COG ID | [COG5104] Splicing factor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.344613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.715644 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGAGT GGGAGAAAGT GACTGACAAC GAAGGTAGAG TATATTACTA CAATTCCAAA
ACGAAGGAAA CAAGTTGGAC CCTCCCCCAA TCAGAATCTT CAGTTTCCAG TGGTTCCAAA
TGGCAGGAAT ATGCTACCGA TGATGGAAGA AAATATTACT ATAACGAGTC CACAGGCGAG
ACTACGTGGG AGATGCCGCA GGAAATGGAG AAAGCTGAAG ATAAAAGAAA CGTCGATGAT
GTAAAAGAAA AGGACGAACA AGTTGCTTCG AAATCAACTG AAGAGAGCCA ATTAGATCTT
CGACTAGCTT CAGAACCAAT CAAAAAGTCA GACTTGGTAA ACCCACCAAA GGATGATTCA
TATCCCGAAT CAGAGGCATT TGTGGAGATG CTTCGTTCTA ATAAGGTTGA TTCGACTTGG
TCTTTTCAAG CAGTAATGTC GAAGTTTATT GATGACCCCA AGTATTGGGC CATTCCTGAT
GCATTGGAGC GGAAGAAATT ATACGACGAA TATCTTGTGA CGAGATTCAA AGAAGATTTA
TCCAACAAGA GTTTATTGGT GGAGACATTC AAAAAGAACT TTGTCGAAAC TCTAAAGAAA
TACGAAGAAA ATGGTAGACT TCTGCGGAAT AGTAGATGGA TCTCAGTAAA AAAGTTACTT
ATCGCTGAAG ACAATCCAAT CTTCAAGCAT TCCATTTTGT CAGATGCTGA GATAGCGGAA
ATATATTATG AATATATCTC CAGACTTAAG AAGCAATATG AAGAAGAATT GTCGAAAAAC
AAGGATCGTG CATTATCTGA ACTTGAATCA TACCTTACCC AAATTAATCC CAACATAGTA
TCTAGCACAA GTAATTGGCA GGAATTACTT GAAAACCTCA AGGCAGATGC CAGGTTCAGG
GCTAACAAGC ATTTCAATGT ACTCAGTGAC GTAGATTTAC TTGAAATGTA TGAGACAAAG
ATATACCCGA CTATCATACA AAAAATTAAG AGCGAGATTG ATGACGTTCA GAAAAAGAAT
TACCGATCAG ACAGGAAGGC AAGACAAAAG TACAAGGCAT TATTGAAGAC ACTCGATATC
AATGCAAATT CTAACTTCAA AGACTTTCTC TACATTCTTG AGAATGATGA TTCATTTATA
GAGCTTTGTG GAAGAAATGG GTCTACAGCA CTCGAGCTCT TTTGGGACAT CGTCGATGAG
AAATCGCAAG TCTTGAAATT GAAAATGTAC TTAGTGGAAT CTGTTTTGCT CGATTTGAAG
AAGGAAGACT CTACTTTAAC AAAGTCCAAG ATACTACTGT CAGAGAATAA TTTCATAGAA
TTTTTGTCCA ATTCTAGTGA CCAGAGAATC GAGAATCTAG ACATTGACCT TAATGATGCT
AATGAAACAG AGGTATTGTA TGGGGCATTG AAAAGAGAGT TTGAAGCTCA ACAAGAAAAG
AGACGCGTTC GCTTC
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| Protein sequence | MSEWEKVTDN EGRVYYYNSK TKETSWTLPQ SESSVSSGSK WQEYATDDGR KYYYNESTGE
TTWEMPQEME KAEDKRNDEQ VASKSTEESQ LDLRLASEPI KKSDLVNPPK DDSYPESEAF
VEMLRSNKVD STWSFQAVMS KFIDDPKYWA IPDALERKKL YDEYLVTRFK EDLSNKSLLV
ETFKKNFVET LKKYEENGRL SRNSRWISVK KLLIAEDNPI FKHSILSDAE IAEIYYEYIS
RLKKQYEEEL SKNKDRALSE LESYLTQINP NIVSSTSNWQ ELLENLKADA RFRANKHFNV
LSDVDLLEMY ETKIYPTIIQ KIKSEIDDVQ KKNYRSDRKA RQKYKALLKT LDINANSNFK
DFLYILENDD SFIELCGRNG STALELFWDI VDEKSQVLKL KMYLVESVLL DLKKEDSTLT
KSKILSSENN FIEFLSNSSD QRIENLDIDL NDANETEVLY GALKREFEAQ QEKRRVRF
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