Gene PICST_62189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_62189 
Symbol 
ID4839897 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp89131 
End bp90264 
Gene Length1134 bp 
Protein Length356 aa 
Translation table12 
GC content42% 
IMG OID640391212 
Productpredicted protein 
Protein accessionXP_001385709 
Protein GI150866199 
COG category[K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0515] Serine/threonine protein kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ACCACTTTCT GTGAAAATGG ATGCTATTTT TCCATTGACT CCAGATACGA GTTAGAGAAG 
GTGTTGGGCA AGGGATCCTA TGGAACAGTA TGCTCTGCAA TCGATACAAG AAAATCACAC
CCCGATGCCG AATACTCTAG GATTGCAATT AAGAAGGTGT CCAACATTTT CAACAAGGAT
ATCCTTCTCA AAAGAGCAGT TCGTGAGTTG AAATTCATGA GACACTTCAA AGGACACAGA
AATGTAAGTA AACACACCAA ATACAGATAT TAGAATATCT ACTAACATTT GAAGATCGTC
AACTTGATAG ACTTAGATAT TGTTTTTACC AAGCCATATG ACGGTCTCTA CTGCTATCAA
GAACTAGCAG ATCTCGACTT GGCTCGAGTT CTCTATTCCA ACATTCAATT TTCCGAGTTC
CACATTCAAA GCTTCATCTA CCAGATTTTG ACCGGGTTGA AATACATCCA CTCAGCTGAT
GTCATTCATA GGGATTTGAA GCCAGGAAAC ATATTGGTAA CTACACAAGG TACTCTCAAA
ATCTGCGATT TTGGACTAGC AAGAGGAGTC AATCCACGTT ACTTTAAACA CCGTTCTTCA
CAAATCACCA ACTATGTGGC TACTCGTTGG TACAGAGCTC CAGAACTAAT GCTTTCTGAG
AAGAGGTATA CCAAGGCAGT TGATCTCTGG GCAGTTGGGT GTATTCTTGC TGAGCTATAT
GGGAGAAAAC CACTCTTTCC TGGAAAGAAT CAGATGGATC AGATCCACTG TATAGTACGA
GTACTTGGTA CACCCCTTCC AGCTGTCATC AATAGAAACA ACTGGAAATT TCTTCTTCCC
CCTCGTCCGC AGTACAGGGT ATCTGAATGG AGCCAATTGT ATCCATTTGC TTCCAAGGAT
GGGCAGGAGC TTATTGAAAG CTTGTTACAA TGGGATCCAG AGAAGAGATT AAGCGTACAC
CAAGCCATCA GCCACCGGTT CATTGAACCT GTCAGAGACT CCAATAGTGA AGCTCTATGT
GAGGTGTTCG ATTTCAGTTT TGAAAACAGG GCTACGACTT TAGGAGAACT ACGTGAACTA
TTGGAGAGAG AGGTAGAGAT GTTCAAAGCG GAGCGGAAGC TGGCGGAAAT GTAA
 
Protein sequence
TTFCENGCYF SIDSRYELEK VLGKGSYGTV CSAIDTRKSH PDAEYSRIAI KKVSNIFNKD 
ILLKRAVREL KFMRHFKGHR NVNLDIVFTK PYDGLYCYQE LADLDLARVL YSNIQFSEFH
IQSFIYQILT GLKYIHSADV IHRDLKPGNI LVTTQGTLKI CDFGLARGVN PRYFKHRSSQ
ITNYVATRWY RAPELMLSEK RYTKAVDLWA VGCILAELYG RKPLFPGKNQ MDQIHCIVRV
LGTPLPAVIN RNNWKFLLPP RPQYRVSEWS QLYPFASKDG QELIESLLQW DPEKRLSVHQ
AISHRFIEPV RDSNSEALCE VFDFSFENRA TTLGELRELL EREVEMFKAE RKSAEM