| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_61977 |
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| Symbol | XYC2 |
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| ID | 4840101 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 467989 |
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| End bp | 471822 |
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| Gene Length | 3834 bp |
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| Protein Length | 1264 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640391416 |
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| Product | putative xylanase/chitin deacetylase |
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| Protein accession | XP_001385777 |
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| Protein GI | 150866246 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5038] Ca2+-dependent lipid-binding protein, contains C2 domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.674296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTTAGAAGAT TCAATAGAGA CATCAGAGAT GACTTGGCCA GAGTCAACGC TATCAACCGT
TTGGATAACG AAGCTGAAAC CATGGAATGG TTGAATTCCT TCTTGGACAA GTTTTGGGTC
ATCTATATGC CTGCCATGTC AGAAATGGTT TTGACCATTG CTAATGGTAT CTTGAAGGAT
TTGGCCCCTG GTTTTGGTAT TGACAAGTTA TCTTTGGATG AATTTACTTT GGGTTCCAAG
GCTCCTAGAA TAAACTCTGT GAGATCGTAC CCTAAGAAGG CTGAAGACCA TATTGAAATG
GACTGGGACT TCTCCTTCAC ACCCAACGAC ACTGATGGAA TGACCAAGGC CGAAATCAAG
AAAAAAATCG ACCCTAAGGT TGCTTTGGGT GTCACCATCG GAAAGGCTTT TATCTCCAAG
TCTTTCCCTG TCTTGGTTGA GGATATGTCT ATGACGGGAA GATTGAAAAT CAGATTGAAG
TTGAGTCAAA ATTTCCCCCA CGTCAAGATT GTCTCTGTTC AATTCTTGGA AGCTCCAACA
ATTGAATATG GTTTCAAGCC TATGGGTGGT GACACTCTTG GTCTTGATAT CATGTCGTTC
ATTCCAGGTT TGAGAACTGT CGTGAATGGT GTTATCCACT CGATCCTTCG TCCTATGTTC
TACGCTCCCA ATTCGTTTGA TGTTGATGTT GAAGAAATGT TGGCTGCGCA ATCAAACGAT
TCTATTGGTG TAATTGCCGT TACCGTCTTA CGTTTGCAAA AGTTGAAGAA AGGTAACCCT
ACTAAGCCAA ACAGTATTAA TCCATACGTT CAGCTTAAAA TTTCTAACAA TGCTAGCATT
AACGAAAAGA CCACTGTTAA GAAGCTTATC AACGATCCTG TCTACAATGA AACCAAGTAC
TTGTTGGTTA ACCAATTGGA CGGTAACCAC TTGAACTTCA ACGTTTTCCA TCTTGTTGAA
GACAAGGCTG ATGATCAGTT GATAGGAAGT GTAGATTTCC AGTTGGCCGA CTTGTTACAA
GAAGAAGCTC ACAATAACGT GATCAAAACC TTAACTGAAA GTGGAAAGGC TGTTGGTAAG
ATTGAGTTCA ACTTGAAGTA CTTCCCAGTC CGTGCACCTT TGGTATTAGA AGATGGAACT
AAGGAACCTA TTCTTGATGC TGAAGTTGGT ATCTTGAAGT TGAACTTGCA TGAAGCTAGA
GATTTGGATA TATCAAGTTC AGTTCTTGGT ATTTTAAACC CCTACGCTGA GATTTATGTT
AATGATGAGT TGGTTAAGAA ATGTCGTAGA TTGAGAAGAA CAAACGAACC ATCTTGGGGC
CAATCACTTG AATCTTTAAT CACTCAGCAG TCTGAAACGA CCGTCCAGGT CTTGATTAAG
GACTCTGTGG ATGACACTAT TGTAGCCAAA TTGAATTCCA ACTTGCAAGA TCTAGTCTTT
GAAACCAGTA GAGGTCAGGA ATGGATTGAA ACTGATCCAG TGACAGAAGG TGGTCCAAGG
CCACGTGTGA GAATCACTGC TAACTGGAAA GCTATCAAGA TTGATGATAC CTCTATTGTC
AAGACTCACG AAAATGCTCC TATTGGTGGT TTAAGGTTAC ATTTGCGTTC GGCCAAATCC
CTCAAGAACT TGGAGGCTGT TGGATTGGTT GATCCGTATG TCAGAGTTTT GTTGAATGGT
AAGTTGAGAG CAAAAACAGC CACATTCGAA AATACACTCG ATCCTTTGTT CAATACGGCA
TACTTTTTAC CAGTTGCTAA CGAACATCAA CATTACTTGC TCCAGATCAT GGACGAAGAA
CCTGAAGGTA AGGACAGATC GTTGGGTACT GCTGCCGTTC ACATTGGAGA CTTCCTAAAG
AGAGACCAAA ATGGGTACTT CTTACCACAT GATGGTGCTG ATACTATTCT TGAGCAACCA
GTTATCTTCA ATGGTCAACC TACTGGTACT ATCTATTACT CAGTTTCCTT TATTCCTGCC
ATTCCAGTAT ATTCCTTGTC TCAGATAAAG AACAAGGAAG CTTACTTGGA AGAAGTCAAA
GAGAAAGAAG CCGCAGCAAT TGCTAAGCAA GCCGCAGACG AAAAACTCTT TAAAGAAAAG
CCAAACGAAT ATGAATGGAT TGAGGTTGAA GAAGAAGAAG TGGTCGAGCC AAAGAAGGTT
CAAATGGGTT TGGACTCTTC CATCAAGTAC AGATCCGGAA TTGTTTCTGT TCATTTGTTG
GGTGGTTCGT TCGAAAAGTC TGATGTCTAT GTTCACACAT TGTTTGATGA ACAAGCTTAC
TCTTCAGGAG TTTCTCCTAA ATCAGAAGGT AACCGTCTAT CGGTTCCATC TTCTGGTGAC
GGTTTTGTTA GAGACTTACC TCTTTCTAAG TTGATCATCA GAATTGCCAA AAAGGTCGAA
GTTGACTTTG AAAGTGACAT CATTGCCGAA CAGATATTTG ATACTTTGGA TATACTAAAG
AAGTCATATT CTAAGCCCAT TACCTTGAGA ATCCAAGACA GAAATCAAGT CAAGCTTCAA
TTGGAATTCA TTCCTTCCGA CGTTCAATTG AATCCTTTGG ATACCGTATT GGATATTGGT
AAGGTTAAGC TTGAGGTTAT AGGTGCGGAC AACTTGAAGT CTGTTGACAC GAACGGAAAG
TCAGATCCAT TGTGTGTAGT GAAGTTGGAC GGCAAAGAAA TCCTCAAGAC AGATAAGAAG
AGAAAGACTT TGAGCCCAGT TTGGAATGAA AGTGTTGATT TCTCCTTGCT TTCGAGATCC
AGACAATCAA TTGTCTTAGA AGTGTACGAT TGGGATTACA CTCACGATGA TGAATTGATT
GGCAAGACAG TTGTGAATTT GTCCTCTCTT GAGCCATCAA AGACTCAAGA GTTTTCATCT
GAATTGGACA CTCAAGGTAG GATTAACTTG AGAGCCACTT TCAAGCCAGA GTACATCAGA
CCTAAGTTGG CTGCTAAGTC AGCATTACCA ATGGACTTGA ACTTTGATGC ACCAATGAAC
GTAGTTGGTG GTGCTGCTGA CGTTGCCGGA AACGTTGCAG GTGGAGTTGT AGGAGGTGCT
GGAGCTGTCG CCGGAGGAGT CGTAGGCGGT GTAGGAGGTA TTGCTTCAGA AGGTATTGCT
AGGGGAGGTT CATTTCTTAA AGGATTTGGA AGACTGAAGA AGAAGCATTC AAGCAATGGC
GACGAAACCT CTACTATAGC AGATGATAGT TTTGCAAGTC ATGATAAGAA CTTCAGCGAC
ATCGAATCTG AAGCTGCGCA TGACAATGCT AGCAGACACA GCCCAATGAG TCCCTCAAAG
AAGGGAAGAG AAGTGGTTAA CAAATCGGCA GAATTGCAAA GCTTGAGATC TGGAGCTGCT
CCAGTCTCCA ATTCTCTTCA ACACTCACAG GTTGACGGCA TAGCCAGACC TCCAATTCCT
GGACATCTCA GAACTCCTAG CGCTGCTTCA GATGCTGCCA GTATCGCAAG TAGCTTTGCT
CCCGGAGCTA TTCCAGGAAG GCTTACAATC GTCTCAGCAT CCAATCTTAA CACCAAAGAT
CCAGTGGAAG TCAAGGTAGT ATTGAAGCAA CCCACCAAAC AAAAGGACTT GTTCAAGACC
AGAAACACCA AGGGCGACAA AAGCGCCAAT ACATTCAAGT GGAACGAAAG CGTACCATTT
AAGTCCGTTA CCGAAGGTGA GCTTATTTTC GACATTAGAG AACACCACAC CTTTGGAAAG
AATGTGTCGT TGGGTCAGGC TACTGTGAAG TTGTCTGATG TCATCGGCAG ACCTGACAAT
TTGGAATTGA ATGTTGGTAG TGGACAATTG GTTGTAAACG TTAGATACAA CTGA
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| Protein sequence | FRRFNRDIRD DLARVNAINR LDNEAETMEW LNSFLDKFWV IYMPAMSEMV LTIANGILKD
LAPGFGIDKL SLDEFTLGSK APRINSVRSY PKKAEDHIEM DWDFSFTPND TDGMTKAEIK
KKIDPKVALG VTIGKAFISK SFPVLVEDMS MTGRLKIRLK LSQNFPHVKI VSVQFLEAPT
IEYGFKPMGG DTLGLDIMSF IPGLRTVVNG VIHSILRPMF YAPNSFDVDV EEMLAAQSND
SIGVIAVTVL RLQKLKKGNP TKPNSINPYV QLKISNNASI NEKTTVKKLI NDPVYNETKY
LLVNQLDGNH LNFNVFHLVE DKADDQLIGS VDFQLADLLQ EEAHNNVIKT LTESGKAVGK
IEFNLKYFPV RAPLVLEDGT KEPILDAEVG ILKLNLHEAR DLDISSSVLG ILNPYAEIYV
NDELVKKCRR LRRTNEPSWG QSLESLITQQ SETTVQVLIK DSVDDTIVAK LNSNLQDLVF
ETSRGQEWIE TDPVTEGGPR PRVRITANWK AIKIDDTSIV KTHENAPIGG LRLHLRSAKS
LKNLEAVGLV DPYVRVLLNG KLRAKTATFE NTLDPLFNTA YFLPVANEHQ HYLLQIMDEE
PEGKDRSLGT AAVHIGDFLK RDQNGYFLPH DGADTILEQP VIFNGQPTGT IYYSVSFIPA
IPVYSLSQIK NKEAYLEEVK EKEAAAIAKQ AADEKLFKEK PNEYEWIEVE EEEVVEPKKV
QMGLDSSIKY RSGIVSVHLL GGSFEKSDVY VHTLFDEQAY SSGVSPKSEG NRLSVPSSGD
GFVRDLPLSK LIIRIAKKVE VDFESDIIAE QIFDTLDILK KSYSKPITLR IQDRNQVKLQ
LEFIPSDVQL NPLDTVLDIG KVKLEVIGAD NLKSVDTNGK SDPLCVVKLD GKEILKTDKK
RKTLSPVWNE SVDFSLLSRS RQSIVLEVYD WDYTHDDELI GKTVVNLSSL EPSKTQEFSS
ELDTQGRINL RATFKPEYIR PKLAAKSALP MDLNFDAPMN VVVVGGAGAV AGGVVGGVGG
IASEGIARGG SFLKGFGRSK KKHSSNGDET STIADDSFAS HDKNFSDIES EAAHDNASRH
SPMSPSKKGR EVVNKSAELQ SLRSGAAPVS NSLQHSQVDG IARPPIPGHL RTPSAASDAA
SIASSFAPGA IPGRLTIVSA SNLNTKDPVE VKVVLKQPTK QKDLFKTRNT KGDKSANTFK
WNESVPFKSV TEGELIFDIR EHHTFGKNVS LGQATVKLSD VIGRPDNLEL NVGSGQLVVN
VRYN
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