| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_61902 |
|---|
| Symbol | |
|---|
| ID | 4840188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | - |
|---|
| Start bp | 576058 |
|---|
| End bp | 580023 |
|---|
| Gene Length | 3966 bp |
|---|
| Protein Length | 1247 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640391503 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001385805 |
|---|
| Protein GI | 150866266 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.262036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.394678 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGGTG AGTCACAGTT CTATATGAAC AGTCCCAAGC CTATGGGACC AAAGGAGTTA
ATAGATTACT CTGTGCTGAG CGTGTCCCGT GAGGCACTAC GTCGGAGATC GTTCCAGCAG
CTTTCCAGAC CAGAATCACG TTCAACAGAA CTCGAGCCAC AGCTACAAAG CCAGTCTTTT
GTGCTGGACA CTGATCCTCT CCAACAGCAG CAACAACAGC AATATGAATA TTCATTATAC
CAGAAGAATA TGAACAGTAA CGGCGAGTTC CAGCCTAGAC CTTCGATACA CAATAGAAAA
CTGCACCGGA GCAGTCACCC TAATGTACCA TACCCTGTGG ATCTGAGTGA AGAACTGGAG
CAAGGTGATT ATGAAGATTT GCCAGATACT GTAAGTCCAG ACTTTGATGT TATCAAGGAA
TACAATTTCC TCCGTCCAGA AGTAGTGCTA CATATAGATT CACCCACCCC CCCTCCTTCG
GAAACTCCAC CACAAGCTTC TAGGACACAA CAAATCATCA ACGAATCGAT TATTACACCA
ACAAAGATAT CGCCTTTACG AAATTCTATT TATGATACTC CTCCCTCCTA CAACGGTTCC
TACTCAGTAA ATGATTCAGG GTTGACTGGG AGTCCTCCAC GCCGTTCATC TATTTCACCA
GCCAGAAACG ATACATTTCT CTCGTCTAGA AAACATTCTC CAAATAGAGA TAGCCGTGAC
AATTCCAAAT CGCCAAAGTT CAGATCATCA CCTTCTTTGT CATATGACTT CCCCATTGCA
CAGCGAACAT TCGTAGAAGG AGATAGCGAC GACGACGAAG GTTATTCATA TGATACAACC
AGACAAAGCG CCACAGAATA TAGCATTATA AATCAGGAGA TGGGTGGACA GGCCTGCTAC
CCAGAAGAAG ATAACGTAGA CTTATTTGAT GATGAGTCCA TAATACATCC ATCTACGTTC
TTTGGGCGTT TACCTACGCT ACCGTCTCCA GGAACTTCGC CTACGAGAAA CAATACATTC
AGCTATTCAC CAAACAGAGA CCTGATGACT TCCATCACGA GAAACTCTAC ACTTTACAGT
GTTAGCCAGC AACGCAAAGA CGAAGACTTG CCAGCATTGC CGTTTGAATT GCCACCGTTA
CCTTTCTCGG CCAAATCCTT AAATAACCAA CACTTTTCTG TTTTTAATGG TCCATTGTGG
TCGTTGAAAA GTATTTTTGA ATGGTCTATC AAGCTACAAG ACTGGCTTGA CGATCTGTTC
ATATCTTTGG CTGAATTTAA AGTAGCCTTG ACAGATCTCG TGACCTATCA CAAGCCAGAC
ATACCGCCAA CTGTGTTGAG TACTCTTGTT GATTCCATCG TAGATAGTCT CTTGCGTTCC
CATGCCATTA GTTTAACATA TCGAGTAGTA ATATCTCCAA ATAATGCATC TGGCAGAGAA
GAAGAGAACG GTATTACTAT TGACGAAATG GCAGCTGTTA GTGGGGTCTT TCCGGCCTTA
ACAACCTGCT ACTATTCAGG AAGCCATGAT AAAGCGCAAG ATCTAAGATT GAAATGTTAT
TCACGTTTTT GTCACTGGAA TGCTGTGATT GAACACGAAG AACAACTCAA AAACCTCGAT
GAAAATGAAA TATACCTAGC ACAGGATTGG GTTTCGTATT GGAAGGTAAC TGATGTAAAG
ACATTGGACA AGAGAGTTGT AACATTGCAA TCGCATGTAC TAGATCTTTT AAGAAATGAA
TGGGGGTTCT CAGCCAGAGC TAGATTATTT GTGGAAGATT TTGGGCCCCA ATTTTTTGCA
AGAGCCAAAA CGGATCCCAA GATAAAGATT CCATCTAATT ATCAGAATGA AGTGATTGAC
TCAAGATCAG AATTGTTGGA AATACATAAG ACAATGGTAC TTGATCCTCT CATAGAGATA
TACAAGTCAG ATGGTAAATT TGTTCATAGC TTTGATGCTA TCGCAAAAAT ATATAGTAAG
TGGACGAAAA AGGCAGAACA GGCTTTTATG AGATATATGT CAACTGTTCC ACTTCTATAC
GAGCTTTTGA ATGTGGAATT TTTAAAGGAA TGGGTGGCCA AGGTCCACGA TAAACGATTG
CTGAAGCTCA ATGCAGATTG TTTGATCCTT TTTCAGAGTA CGTTTTCTTC GCGGGCTTTT
AAATTACCTT TGGAATTGAG AGGTATTCTG GATCTTCTTG GTGAAGAAGA CAAACAGTCA
CTTGCCAAGG CAGTTGAAGA TGTTCAAAAT TTGACTTCGA AAATTCAGAA GATGAAAGTT
TCTGTAGAGA ACAAGAACGA ATTAAGAAAG CTCCAAGAGA TTAAATGGGG CAATTTTAAT
AAAGAACGCG TGAATTTGAA GTCAACCAAC AGGCGGTTTA TCAAGAGAGG ACCATTGGTT
AGAAGAGGTG AATTGAAGAT CAACACCTAC AACAATCATG TCATCTTGTT GGATAACTAT
TTTATTATCA CTGAAAGATC TAGAAATAGA GCTATCAATG AGTATATTGT CGAGAAGAAC
CCAATTCCAG TTGAACTTTT ATTAGTTGAG GAAAGAGAGT CGTCTTCCAA AACCATTTCT
CATTCGCCAG TAACAAGTGG TCCATCCCAA AACCAAGAAG AGGAGCCTTC CAATTATCAG
TTCAAGGTCA GATACGCCGG ACGTGGCAAG CGTTTTGCAT TCACATTCAT AACCAAGTCC
GAGAAAGATA GGGCTGACTG GATCAGAGAC ATTAAGTATG CTAGAACAGC CTTGTGTTCT
AGATTGCGAA GAACAGAACC ATACTCTTTG AATCTCATTT CCAATACTTG TTTTGGTTAT
GAGCAAATAG ACAAGATCGA GAAATTGCCT ATATGCGCGG AGCAGGATCC CGTGTATGAT
TTGTCAGTAG ACACCATGAA GAAATTGAAC TTTCTGTCTG GAAGCGATAT TTACAGTCTT
GCTGGATCAG TAGTGTTTAG CAAGGTTCTC AGTATGTGTT CATTCGAGTT TATGGGATCT
CAATTTGTGC TTATTGGGCT AGCCTCTGGA TTGTACTGCT CTGATCTCCA GAATAAATGG
CGAAAGGTAG CAAATGGAGC TAATTTCGTC AGCTTAGCTA CTGACACTTC GATGTCCCTT
CTATTGGTAT TGGCTGGAAA TAGGCTTTTA TACTATGCGT TGGACCTGAT TGTAGATGTT
TATTATGAAA GAAGGAAACA TCTCACCAGT GTCCAACTTG CTAGCAAGGC ATCATTCTTT
GAGATTGGAA AACACAGGGC AATGACTATG ATTTTCGTAG CCAAAGCAAA CTCGTCAGGA
ACCGACTTCA CAGTATTCAT TCCTGAAACT GATAATGGAG GAGTTTTCAG TACTTTCAAG
GAGTATAAAA AGTTCCACGT TGCTGCGGCC TGCTATGGAG TATCGTTGTT TAACTCTTCA
TTTGCTGTCC ACACTAACAG AGGTATTGAG ATTTTGAATC TATCTACACT TTTGCCTAGA
TCAGTACCTG AATTTTCCAA CACCGAGAGT CTAAGCAGAA GATCTTCCAC TACTAGTGCC
AACTCCAATA GCAACAATAT TGAAGCTATC AGGCTGGCAG TAGTAGCCAC GGGGATTAAG
CCTATGGGGA TGTTCAAGAT CAGCAGAGGC CAAGAAAGTG ATCTTCATGA ATTCTTGTTG
GTATATAGTA ACTTTGCCAT TTTTATTGAC CCTCTGGGAA AGCTTTCGCG GAGTTCGATT
TTAAGATTTG AATTCCAAGC AAAATCGATT GCTTTTGTCA AGAATAGTTT GTTCTTAGTG
TGCGATGAAG TCATAGAAAT TTGGAGAATC AGCGAGTTCT CCAATGGCTC CAATGGTCTT
ATCCAGGTAA TCACAGGTAA GGGTATCCAG ATGATCAACA GCGATAAGTT GGCGTTTTCT
ATGGCCAACC CCATGGTCCC GGGAATGCAG TTGGTGTTTG AGTTGCGCAA GAAATCATCA
ATGTAA
|
|---|
| Protein sequence | MTGESQFYMN SPKPMGPKEL IDYSVSSVPS IHNRKSHRSS HPNVPYPVDS SEESEQGDYE
DLPDTEYNFL RPEVVLHIDS PTPPPSETPP QASRTQQIIN ESIITPTKIS PLRNSIYDTP
PSYNGSYSVN DSGLTGSPPR RSSISPARND TFLSSRKHSP NRDSRDNSKS PKFRSSPSLS
YDFPIAQRTF VEGDSDDDEG YSYDTTRQSA TEYSIINQEM GGQACYPEED NVDLFDDESI
IHPSTFFGRL PTLPSPGTSP TRNNTFSYSP NRDSMTSITR NSTLYSVSQQ RKDEDLPALP
FELPPLPFSA KSLNNQHFSV FNGPLWSLKS IFEWSIKLQD WLDDSFISLA EFKVALTDLV
TYHKPDIPPT VLSTLVDSIV DSLLRSHAIS LTYRVVISPN NASGREEENG ITIDEMAAVS
GVFPALTTCY YSGSHDKAQD LRLKCYSRFC HWNAVIEHEE QLKNLDENEI YLAQDWVSYW
KVTDVKTLDK RVVTLQSHVL DLLRNEWGFS ARARLFVEDF GPQFFARAKT DPKIKIPSNY
QNEVIDSRSE LLEIHKTMVL DPLIEIYKSD GKFVHSFDAI AKIYSKWTKK AEQAFMRYMS
TVPLLYELLN VEFLKEWVAK VHDKRLSKLN ADCLILFQST FSSRAFKLPL ELRGISDLLG
EEDKQSLAKA VEDVQNLTSK IQKMKVSVEN KNELRKLQEI KWGNFNKERV NLKSTNRRFI
KRGPLVRRGE LKINTYNNHV ILLDNYFIIT ERSRNRAINE YIVEKNPIPV ELLLVEERES
SSKTISHSPV TSGPSQNQEE EPSNYQFKVR YAGRGKRFAF TFITKSEKDR ADWIRDIKYA
RTALCSRLRR TEPYSLNLIS NTCFGYEQID KIEKLPICAE QDPVYDLSVD TMKKLNFSSG
SDIYSLAGSV VFSKVLSMCS FEFMGSQFVL IGLASGLYCS DLQNKWRKVA NGANFVSLAT
DTSMSLLLVL AGNRLLYYAL DSIVDVYYER RKHLTSVQLA SKASFFEIGK HRAMTMIFVA
KANSSGTDFT VFIPETDNGG VFSTFKEYKK FHVAAACYGV SLFNSSFAVH TNRGIEILNL
STLLPRSVPE FSNTESLSRR SSTTSANSNS NNIEAIRSAV VATGIKPMGM FKISRGQESD
LHEFLLVYSN FAIFIDPSGK LSRSSILRFE FQAKSIAFVK NSLFLVCDEV IEIWRISEFS
NGSNGLIQVI TGKGIQMINS DKLAFSMANP MVPGMQLVFE LRKKSSM
|
|---|
| |