Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_61692 |
Symbol | |
ID | 4840073 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | - |
Start bp | 337312 |
End bp | 338136 |
Gene Length | 825 bp |
Protein Length | 208 aa |
Translation table | 12 |
GC content | 42% |
IMG OID | 640391388 |
Product | predicted protein |
Protein accession | XP_001385752 |
Protein GI | 150866229 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.320803 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00450301 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTCGTGGT TTTGTTCTAT TACGCTCATG GCTCTCGTTA TTGCCTACGT AAATGCAACT CCTCCAGCAT GTTTCCTTAG CTGTATTGCT GAAGTTGCCA AAACATGTCC TCTCCAGAAA ATGGATATCA CTTGTCTTTG TGCCAAAGAA GATTCTGTTC TTGGCTGTAT GGTTGATATC TGTCCATATG GAACATTCTT CAGTGGAAGA GATCATTTCA TTGGTACTTG TATGGAACAC GGCAAACCGT CAATTTCAAA CCCTCATCCG CCAGATCCAA TTTACCCGCC AAAATTATCT TCATCTATTT CTACAAAACC TACTCCAATT TCTTCTTTCA GCCTGACTAT TACCGACGGC CTGTTAACTA GTGAAAATCT GTTAACTAGT GTTAGCCTTT CAAAACCTGC TAGACTGTCA ATTGTCAGTC TGTCTACCAC TGTCAGCTTG TCAACCGGAA CAACATCACC ATATTGGACT TCATGGACAA CTTCGACTAT TTCTTCATTA CCTACTTCGA GAAAAACTTC GATAATCACT TCGACGATTT CTTCAATCAA GTACAAGCCT TCTATGACTT GGACTACATC TACACAGCAA CAAATCGAAA CAGGCAAACC TGAATCCGAC TGCGATTCTG ATACAGAGTC CGAAGATGAA TATAACAGCG ACGAAGATTG TGAATGGGAA GAAACCCAAT CGGTTGATGC TGACGGCAAT GTTATCTTCA TCAGGAGACC TATCAATGTG CCGCAGAAGT ATCGCAACCC AAAGAACAAC GGCAAAACCC GAAAGGTTAT CATCAAGAAA CCTCCCCAGG ATTAC
|
Protein sequence | MSWFCSITLM ALVIAYVNAT PPACFLSCIA EVAKTCPLQK MDITCLCAKE DSVLGCMVDI CPYGTFFSGR DHFIGTCMEH GKPSISNPHP PDPIYPPKLS SSISTKPTPI SSFSSTITDG LVSLSKPARS SIQQIETGKP ESDCDSDTES EDEYNSDEDC EWEETQSVDA DGNVIFIRRP INVPQKYRNP KNNGKTRKVI IKKPPQDY
|
| |