| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_49179 |
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| Symbol | RAD16 |
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| ID | 4840079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 350961 |
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| End bp | 353066 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640391394 |
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| Product | nucleotide excision repair protein |
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| Protein accession | XP_001385416 |
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| Protein GI | 150865976 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.191959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0369979 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATCG AATTGTCAGA AGACGATCTT GATTTGGAAG ACGACTTACC TTTATCAAGT
AGAGGTGCAA ACAAGAAAGG TAAAGTAACC AAGAAAAAGC CGAGGAAGAA GAAGGAGCCC
AAAGTTAAAG TTCCATATTT CACGCGTATC ACCAACCGTT TGTACGAGTT TCACCCTCAC
TTGAAAGATG TATTCCCCTA TTTGGCGTCT TTGGAACGGA TTCCAGTAGA ACGCTCTCCA
CAACCTCCTT CAATGAATAT CAAACTCTTG CCGTTCCAGC TTGAAGGTTT GAACTGGTTG
AAGAAACAAG AAGATGGTGA GTTTCAAGGT GGAATATTGG CCGATGAAAT GGGTATGGGT
AAAACCATCC AGACAATCGG GTTATTCACC AGTGACTTGA CTAAGCGGCC CAATTTGGTA
GTTGGTCCAA CTGTTGCGTT GATGCAATGG AAAAATGAAA TCGAAAAACA TACAGAACCG
GGATTGTTGA AAGTGTTGTT GTACCATGGA GCCAACAGAA CTACTGATGT CAAAGAGTTA
AGTAAATATG ACGTCATATT GACATCGTAC TCCGTTCTTG AATCTGTATA TCGTAAAGAA
AACCATGGAT TTAAGAGAAA AAGCGGATTG GTAAAGGAAA AGTCAGCACT ACATGCAGTG
GAATTCTACA GAGTGATTTT GGATGAAGCT CACAACATCA AGGACAGAAC ATCTGGAACA
GCTAAAGCAG CGAATAACTT AAGATGTAAG AAGAGATGGT GTTTGTCAGG AACACCATTA
CAAAACAGAA TTGGTGAAAT GTACTCCTTA ATTCGATTCA TGAAAATGGA GCCTTTTCAC
CAATACTTCT GTACCAAGTG TGATTGTAAG AGTGACGAAT GGAAGTTTTC TGATTGGAGA
CACTGTGACC AATGTGGGCA TGCACCAATG GTTCACACCA ATTTCTTTAA CCATTTCATG
TTGAAGAATA TTCAAAAATT TGGTATTGAG GGTGACGGTC TAGTAAGTTT TCAGAATATT
AGGCTACTTT TGCAAAATGT AATGTTAAGA AGAACCAAAA TTGAAAGAGC TGATGACTTG
GGACTACCAC CAAGAATAGT AGAGATCAGA AGGGACAGGT TTAACGAAGA AGAAAAGGAT
TTGTATACAT CGCTATACAG TGATTCCAAG AGAAAGTTTA ACGATTATGT CGCTGAAGGT
GTCGTGTTGA ATAACTATGC CAATATCTTT ACTTTGATAA CAAGAATGAG ACAGCTTGCT
GATCATCCGG ATTTGGTATT AAAAAGAGTT GGCACGAATC AAATTTCCAG TGAAATCGAA
GGAGTGATAA TGTGTCAGCT TTGTGACGAT GAAGCTGAAG AGCCGATTGA ATCTAAGTGT
CACCATAGAT TTTGCAGGAT GTGTATTCTG GAATACGTAG AGTCATTTAT GGGCGAAGAG
AAGAATTTAC AGTGTCCGGT TTGCCATATT GGATTATCTA TTGATTTGGA GCAGACTGCC
CTTGAAGTTG ACGAAGAGTT GTTTTCAAAG GCTTCTATCG TCAATAGAAT CAAGATGGGT
TCGCATGGAG GTGAATGGAG ATCTTCTACA AAGATCGAAG CTTTAGTAGA AGAACTCTAC
AAGTTAAGAT CAGACAAACA TACGATCAAA TCCATTGTCT TCTCACAATT TACTTCGATG
TTGGACTTGA TCGAATGGAG ACTAAAGAGA GCTGGGTTCC AGACAGTGAA ATTACAAGGA
TCGATGTCTC CACAACAGCG TGACAATACT ATCAAGTATT TCATGGATAA TACTGAAGTA
GAAGTATTCT TGGTTTCTTT GAAAGCCGGT GGTGTCGCCC TTAATTTGTG TGAAGCCTCT
CAAGTATTTT TGATGGACCC CTGGTGGAAT CCAAGTGTTG AATGGCAGTC CATGGATAGG
GTGCATAGAA TTGGCCAAAA GAGACCTATT CGAATTACCA GATTTTGTAT TGAGGACAGT
ATAGAGATGA AGATTATTGA GTTACAGGAA AAGAAAGCCA ATATGATTCA TGCTACTATA
AACCACGACG ACGGTGCGGT GAATCGTTTG ACTCCCGATG ACTTGCAGTT CTTGTTTATG
AACTAA
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| Protein sequence | MAIELSEDDL DLEDDLPLSS RGANKKGKVT KKKPRKKKEP KVKVPYFTRI TNRLYEFHPH
LKDVFPYLAS LERIPVERSP QPPSMNIKLL PFQLEGLNWL KKQEDGEFQG GILADEMGMG
KTIQTIGLFT SDLTKRPNLV VGPTVALMQW KNEIEKHTEP GLLKVLLYHG ANRTTDVKEL
SKYDVILTSY SVLESVYRKE NHGFKRKSGL VKEKSALHAV EFYRVILDEA HNIKDRTSGT
AKAANNLRCK KRWCLSGTPL QNRIGEMYSL IRFMKMEPFH QYFCTKCDCK SDEWKFSDWR
HCDQCGHAPM VHTNFFNHFM LKNIQKFGIE GDGLVSFQNI RLLLQNVMLR RTKIERADDL
GLPPRIVEIR RDRFNEEEKD LYTSLYSDSK RKFNDYVAEG VVLNNYANIF TLITRMRQLA
DHPDLVLKRV GTNQISSEIE GVIMCQLCDD EAEEPIESKC HHRFCRMCIS EYVESFMGEE
KNLQCPVCHI GLSIDLEQTA LEVDEELFSK ASIVNRIKMG SHGGEWRSST KIEALVEELY
KLRSDKHTIK SIVFSQFTSM LDLIEWRLKR AGFQTVKLQG SMSPQQRDNT IKYFMDNTEV
EVFLVSLKAG GVALNLCEAS QVFLMDPWWN PSVEWQSMDR VHRIGQKRPI RITRFCIEDS
IEMKIIELQE KKANMIHATI NHDDGAVNRL TPDDLQFLFM N
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