| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_47702 |
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| Symbol | PDZ1 |
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| ID | 4839935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 546870 |
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| End bp | 549821 |
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| Gene Length | 2952 bp |
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| Protein Length | 983 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640391250 |
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| Product | hypothetical signalling-associated PDZ domain containing protein |
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| Protein accession | XP_001385455 |
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| Protein GI | 126137864 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.849223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTGC CCACAAAAAG AAGACTCTCG TTTGACGAGT CGACTAATAA ACGGTTCCTC
AACGGAACCC ATTCTACTGA GAACAATACC AGTAATATCG AAGTCGACGA AGATTATGGT
TCTGACGGTT CAGAACAGAT CTTTGACTTG CCAGCTACCA CCAACAATAA CCAGTGGCAA
GAAACCATCA CCAAGGTCGT CAACGCTGTT GTTTCTATTC AGTTCACGCA TGTGTCCAAT
TTTGACACCG AAACTTCGCT TGTTTCAGAA GCCACGGGTT TTGTTGTAGA TGCCACCAGA
GGGTTGATCT TGACTAACAG ACATGTGGTG GGTCCTGGAC CTTTCTGTGG CTATGTAGTG
TTTGACAACC ACGAAGAAGC TGTCGTCAAG CCTATCTATA GAGACCCTGT GCATGATTTC
GGGTTCTTAC AGTTTGACCC CAAAGAAGTG AAATATTTAC AGTTGACCCA GTTGGAGTTG
AAGCCCGACT TAGCTAAAGT CGGTACTGAG ATCAGAGTTG TAGGTAACGA TGCTGGTGAA
AAGTTGTCTA TCTTGGCTGG GTTCATATCT CGTCTCGATA GAAATGCTCC TGAATACGGA
AGTTTGACCT ACAATGATTT CAATACTGAG TATATCCAAG CTGCAGCTTC TGCTTCTGGA
GGTTCTTCAG GCTCTCCAGT AGTGAACGAA GACGGTGACG TTGTAGCACT ACAGGCTGGT
GGTTCTACTG AAGCATCTAC CGATTTCTTT CTCCCTATCT ACAGACCTTT GAGAGCATTA
CAGTGTATCC AGAAGAAGCA ACCTATCACC AGAGGCGATA TCCAAGTGGA GTGGCAGTTG
AAGCCATATG ACGAATGTAG AAGATTGGGT TTAACTCCGG AAGCCGAAGC CAGAGCAAGA
AAGTTGTTTC CTAATAAAAT TGGTCTTCTT GTAGCTGAAC TCGTCTTGCC TCAAGGTCAA
GCTGATGGGC TCATCAAGGA AGGTGACACC TTGATTTCAA TTGACGACAT AGACATTTCT
ACCTTTATTA AGGTTGATGA AATCTTGGAT GAGAACGTTG GAAATGAGTT AAAGTTTGTC
ATCCAAAGAG GAGGAGAGGT GATTACCCAA ATGATCAAGA TTGGCGATTT GCATTCCATC
ACTCCAGACA GATACGTCGA TGTCGGTGGT GCCTCCTTTA ATAATCTTTC CTACCAGGTC
GCCAGATGCT ACTGTATACC TGTCAAGGGA GTTTTCATCA ACGACGCTTC TGGCTCCTTT
GAATTTGCTT CTTATGAAAA GTCAGGCTGG TTGTTGGAAA CAGTTGACGA CATGCCCACA
CCAGATTTGG ATACTTTGAT CGAAGTGATG AAGATGATTC CAGACTGTCG TAGAGTTCCC
ATCACCTACA GACATGTTTC TGATTTGCAC ACAGAAAACA TTCAGATCAT TTACATTGAA
AGACACTGGC AGTCCAGTTT CAGATTGGCT GTTAGAAACG ACACTACTGG ATTATGGGAT
TTCACAGATC TCCAGGAAAA ACCTCTTCCT CCATTATCCC ACGAGCCACA AAACGCCAAG
TTCATCGATA TCCCCTTCAG CGATGAAACC AGGTCTGGCT GCTCTTCTTT GGTTCGTTCA
TTTGTTCAAG TCAGACTTAT CGCTCCTGTT CCTATGGACT CTTACCCATA CCGTAAAGAG
ATCTGTTATG GTGTGGTTGT CGATTCAGTC AACGGTTACG TCTTGGTTTC CCGAAGATTC
GTACCCCACG ATATGTGCGA TATCTTTCTT ATTTTCGCTG AGTCTATTGA TGTTCCAGCC
AAGGTTGTAT TCCTTCATCC TAACCAGAAT TATGCCATCT TGAAATACGA CCCTAGTTTG
GTTTTGGCTG ATGTCAAGAC TCCCAAGTTT GGCGACAAAC CATTGAAGAG AGGTGAAAAA
TCCTACTTTA TTGGCTACAA CTACAACTTG AGATTAGTCA CTGATGATGT GAAGATCAGT
GGTGTTTCTT CGTTGAACAT CCCCCCTGCC TCGTTGTCGC CCCGTTACAG AGGAACCAAC
TTGGAGTGTA TTCTCTTGGA TAGTAAGATC AGCGTAGAAT GTGATAGTGG TGTTTTGGCT
GATGATGATG GTACAGTACG TGCATTCTGG ATCACCTACT TGGGTGAAGC TACTTGTGAT
CAAGGCAGTG ATAGAATGTA CAGAATGGGC TTGGATGTCA CTGATGTCTT GAGTGTGATC
GAAAAATTGA AGGTAAACGA AATCCCTAAG CAATTGAGAC TCTTGGAAGC CGAGTTTACT
TCCGTAACCA TTCTCCAGGG TAGAACCAGA GGTGTGTCAC AGGAATGGAT CAATAAGTTC
GAAGAAGTTT GTGAAGACGA AATCAAATTC TTGGCTGTAG AAAGAGTGTC TGCCCCTACT
TTACACCAGG AAAAGAACCC ATTGAAAGCA GGTGATATCA TCTTGTCTGT CAACGACATC
ATTGTGAAGA ACATGAGAGA CTTGAAGCCA ATGTTCACTG AACAAGAGTT GAAGTTTCGG
ATCATCAGAC AAAAGAAGGA AACTGAAATT GTGGTTCCAA CCATCGATAC CACGACCATC
AACACTTCAC ACGTTGTCTT CTGGTCTGGA GCTATCATTC AGGCTCCGCA CTACGCTGTT
CGTCAACTTA TGGAAAGGGT TCCTTCAGAA GTCTATGTCA CTCGTAAGAG TGCTGGAGGT
CCAGCTCATC AATACGGTAT AGCCACTAAC AGTTTTATTA CCCATGTGAA CGACGTCGAA
ACCAAGGATC TCGTCAGCTT GATGAAGGTT GTCAAAGACA TTCCTGACAA CACCTACATT
AAGTTGAGGT TAATGTCTTT TGACAATGTT CCTATTGCCA TCTCGTTGAA GACTAACTAC
CACTACTTTC CAACGTCTGA GTTGAAGAAA AAAGAAGGCT CCGACGAATG GATCGAGATC
GAACACAAGT AG
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| Protein sequence | MSVPTKRRLS FDESTNKRFL NGTHSTENNT SNIEVDEDYG SDGSEQIFDL PATTNNNQWQ
ETITKVVNAV VSIQFTHVSN FDTETSLVSE ATGFVVDATR GLILTNRHVV GPGPFCGYVV
FDNHEEAVVK PIYRDPVHDF GFLQFDPKEV KYLQLTQLEL KPDLAKVGTE IRVVGNDAGE
KLSILAGFIS RLDRNAPEYG SLTYNDFNTE YIQAAASASG GSSGSPVVNE DGDVVALQAG
GSTEASTDFF LPIYRPLRAL QCIQKKQPIT RGDIQVEWQL KPYDECRRLG LTPEAEARAR
KLFPNKIGLL VAELVLPQGQ ADGLIKEGDT LISIDDIDIS TFIKVDEILD ENVGNELKFV
IQRGGEVITQ MIKIGDLHSI TPDRYVDVGG ASFNNLSYQV ARCYCIPVKG VFINDASGSF
EFASYEKSGW LLETVDDMPT PDLDTLIEVM KMIPDCRRVP ITYRHVSDLH TENIQIIYIE
RHWQSSFRLA VRNDTTGLWD FTDLQEKPLP PLSHEPQNAK FIDIPFSDET RSGCSSLVRS
FVQVRLIAPV PMDSYPYRKE ICYGVVVDSV NGYVLVSRRF VPHDMCDIFL IFAESIDVPA
KVVFLHPNQN YAILKYDPSL VLADVKTPKF GDKPLKRGEK SYFIGYNYNL RLVTDDVKIS
GVSSLNIPPA SLSPRYRGTN LECILLDSKI SVECDSGVLA DDDGTVRAFW ITYLGEATCD
QGSDRMYRMG LDVTDVLSVI EKLKVNEIPK QLRLLEAEFT SVTILQGRTR GVSQEWINKF
EEVCEDEIKF LAVERVSAPT LHQEKNPLKA GDIILSVNDI IVKNMRDLKP MFTEQELKFR
IIRQKKETEI VVPTIDTTTI NTSHVVFWSG AIIQAPHYAV RQLMERVPSE VYVTRKSAGG
PAHQYGIATN SFITHVNDVE TKDLVSLMKV VKDIPDNTYI KLRLMSFDNV PIAISLKTNY
HYFPTSELKK KEGSDEWIEI EHK
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