| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_36794 |
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| Symbol | |
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| ID | 4840412 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 1306840 |
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| End bp | 1310616 |
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| Gene Length | 3777 bp |
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| Protein Length | 1096 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640391727 |
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| Product | predicted protein |
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| Protein accession | XP_001385603 |
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| Protein GI | 150866114 |
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| COG category | [A] RNA processing and modification |
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| COG ID | [COG5183] Protein involved in mRNA turnover and stability |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGTTA ACACTTGTCG TATTTGTCGT GGAGAAGCGA CACGAACACA GCCTTTGTTG
CACCCGTGCA AATGTAGAGG TTCTATCAAG TATATCCATC AGGAGTGTTT GCTTGAATGG
CTCAGACATC TGAACAAACT GTCAGAAAAA TGTGATATTT GCAACACCCA GTACAAATTT
CGGATTATCT ATGATCCGGA AATGCCATCC CGGATCCCGT TCTTGCTTGT GTGGTTCAAG
TTGATCCAGA TCTTGCTGCT GGGAGCCATT AAATCCGTTC TGATAGCGCT ATATATCAAC
TGTCTAGTGC TACAAGTACC ACTATACTGG AAGTTTGCTG GTAGAATCTA TACATGGGCC
ATAGACGGTC AGTTGCCGGC GAAAAACCCG ACATTTTTGC TGGCGCTCTT GTTTGGAGAG
TACGATATTC GTAGCTATAT CGAGTCTGCT GCCTCAGCTC TAGACACTGG CTTTGAAGTA
TCTTCTTTTC AGCTTCTGCT TCTCAAACTC CGTAAGTTCT TTGAGTACAC GTATTTCAGC
GGAATCCGTT ACATTTTCAT TGCAATTGCT GTTCATATCG CTTTGTTTAT TGAACATGAA
TGGGTAATAA GAGATGAAGG ATTTCAAAAG CTTTTGCTTC GAAAGATCGG CTCTGAACCT
AGTGCTAAAC TCGTCGACTT GCTCCAGCAG ACTTTGCATG CTCAAAGAGG AGATGGTAAC
AATAATAATG AAGAAGCTAC GGCCAATTTG GAACGTTTGG AGACACTTGC TAGAGCCATC
AGAGATCTTC AAGATGAAAA CATTAACAAT AACAACAATA ACAATGAGGC TCTTCGTAAT
GCTATAAATG CCAGAAATAT TTTCAACGAT GATGTCAATA TTGGCGAAGC TGACGATGAA
GACGATCTTT CTGAAGGCGA AGTAGCCGAT GATGAGGAAG CAAGAAGAAT CGATTTCTTG
GACCTTGTAA ATGAAGCTCC ACCTAGGAGA GTGATTAGAA ACCAAGAGGA CAATGCCGAC
GTGGAATTTA TTCAACAAGA GCCATTCAAC CAATTCCAAG AAGCAAATTT GAATCACAAT
CACGATATTG CTCATAACCA AGACAATTTT CATTTTGATA ATCATCCTAA TGTTAATAAT
GATAATAATA TTGATAATCT TCATGAAGAT CATAATGATG GCGAAGGAAA TTTTCCAATT
GTTGCACAGG ATGATGATGA ATGGTTCCAA CAAGATATTG ACCATGACGA AATGGATGCA
GAAGTTGCCG CTTTAGCTGA GGCAAATGCT GATGGAGGAG GAGGTTTTGG TGATCTTTTA
GAACTCTTTG GGATCAACTT AAATATCAAG ACGCCGATTT TCCTTATGTT TGTCTCTGAC
TTTGTCATTT CTGCATATTT ATTTTTGATA TACTTAATTC CTCACATGCT TGGAAACTTG
TTCTTCTCGG TGGCTGGCAT GGGGATCAGA TTGGTCAACT CCAGCGTGAT AAGAAGTCTC
ATTTCGCCTA TGGTATCCAA ATATCAACCA TTTTCCAAAG CTAACGAATG GAAAGAGATG
TACGCGGAAG AACATGAGTT GGTCAACTTC ACGATGACTT CTCTTCAAGA ATACTTTGTA
GTCCCCGCAT CCAACATTTA TATCAATCTC TTTGAAGCTG AGCATCCCCA CTACTCATTG
GCGGAGAGAA TCATTCTTCT TACGATTGGA TATGCCATCA TTGCCTTTGG AATCTACCGG
TTTATGAAAG TACTTGTCAA AGGTAAGAAG CCTGTAATGG GTACCCCCAG AAAGATTTAC
AAGATTCTCT TCGAGGTAAG CTCCACAGCA AAAGTATTTT TCATCTTTTC CATTGAGATC
TTCTTCTTCC CTGTCTACTG TGGATGGCTT CTTGACTTTT GTGTGGCACC TTTAGTCTTG
CCCCAGTTCA CGAGGAAGTC ACCTTCAGGT GTTGATACGT TTGTGGTGTT GGTATCTTCG
TATTATGACT CACTCCAGGA GACATATTTG CGTGTATTAA TGTACTGGAG CTCGGGAACA
CTTTATATGC TTCTCTTTGC ACTTTTTGTT GGCATGGTTC GTACCAATAT CTTACGCCCC
GGCGTTCTTT TCTTCATCAG ATCACCTGAC GACCCCAATG CCCGTTTAAT CCATGATGCT
CTCGTGAAAC CACTCATGTT GCAATTGTCT CGTATATACT TGAGTGCTAA AGTGTATACT
GGATTTATTA TAATTGGTAT TGGAGGTGTC ACCTGGGGAT TGAGACATAT ATTGAGCACT
ACAAAAGGAA CCATATTTCT TCCAATACAG AGTTCTTCGG TCTTCTTTGA TATCATCCTC
TGTGTTTTGG CGACGAGAAG CTTGGTTTCC CAGCAATGGG CTCTTGAATA CTGTCAGCTA
TACTGGACTA GAGTGTTCGA AATCTCGTGT CACAAGTTGC GTTTGTCTCA CTTCATTTTG
GGCAAGCCGA TTTCGCAAGA AAGAGGCTAT ACTGTCTACA GAAACATTTT CCAGACGATA
ATGGCCACGG CCCAGCCTGA TTTCACCTCC CCAGTCTCAT ACAGACAAGC CCAAGAGATC
TTTAAACTGA ACCCCAATGT TAATGCCTGT TTTGTTCCTG ATGGTAACTA TATTAGAGCT
CCAGACAGCG ACACGGTTTC TCGTAAATTC GTCAAGAAGT TGTTCGTCTC TGTCACAAAG
GACGACAAGT TACTAACTGC AGCAGAAATC AACACTGCCC CTTCAGCTTA CGAGACTCCT
TCATCTGAAG CAGAAGACGA ACTCAGTACA GACAATTCAT ACACTATTGT CTACAGACCG
CCTCACTTCA AGATGCGCTG TTTGGCACTT ATTTGTATGC TTTGGGTGTT TGCTGTCATC
ATAACTATGG CAGTAACATT TGGAGCATTG TTGCTGGGAC GGATGATACT CATTGTTGCC
CTGTACACTG CTGATTCCAA GTTGTACGAT GCCATGGTCA AACGCCAATA CCGATTCGAC
ATCCCGTGTT TGGCAATTGG TCTACTTTTG GAATTCACCT TGTTGTATCA ATTTGACCAG
GGTGTTATCC AGTTGGACTT CTTGCAGAGA TTCTTCCACA AGGAAGTAAG AAATGAAGCA
GCCAATGTCG TAAATGAAAA CGATAATATT CAGCAGCGGC CTCAGCAACA ACTTGGAAAC
CAAAGAAATG CAGGCAACGA GTTCAGATTT GATCAATTCC AAGAACGGTT CAGAAAGGAG
TTGACTTACG TATGTGTCAT CGGCTCTTTT CTCTTATGGG CCCTTTGGGT TCAGGGTGTA
CACATTCTCT GTGTGGATCG CCCGATTCGT TTCTTGTTCA ACACCCCCGA TGGTCCATTT
ATAGTTGACA AGTTTTCTAT TCCCGTCCAT TTCCTTGTCT CGTTCTGGAC GTTTCTCCCA
TTCATTTACT ACGTTATGAA CTCCACTAGG TTTGTACGTA TTGAAAACAA TAATGATGGC
GAGTTTGACA TTGCTCGAAT TCTCTCGGCA TGTGGATTCT ACCAGGCGTT GATCAACATC
GCTATCGTAG TAGTCCCTAC AGCTTCACTC AATTTCTACT TGTCATATCT CGGAAAGCCA
GCTGACGACT CAAGACGGAT CTACATGTTT CCCTTAGCCT ACTTTTTCTT CATTGTAGCC
AAGTCGATTC ACGAAGCATA CCGATTCTAT TCTAGAGTCA ACGACCAGGT AAAGAACGAG
CGTTATGTGA GAGGTAGAGC TATTGAAAAT GTTGAAATTT CTGACAACGA ACAATAG
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| Protein sequence | MEVNTCRICR GEATRTQPLL HPCKCRGSIK YIHQECLLEW LRHSNKSSEK CDICNTQYKF
RIIYDPEMPS RIPFLLVWFK LIQILSSGAI KSVSIALYIN CLVLQVPLYW KFAGRIYTWA
IDGQLPAKNP TFLSALLFGE YDIRSYIESA ASALDTGFEV SSFQLSLLKL RKFFEYTYFS
GIRYIFIAIA VHIALFIEHE WVIRDEGFQK LLLRKIGSEP SAKLVDLLQQ TLHAQRGDGN
NNNEEATANL ERLETLARAI RDLQDENINN NNNNNEALRN AINARNIFND DVNIGEADDE
DDLSEGEDDD EWFQQDIDHD EMDAEVAALA EANADGGGGF GDLLELFGIN LNIKTPIFLM
FVSDFVISAY LFLIYLIPHM LGNLFFSVAG MGIRLVNSSV IRSLISPMRF PASNIYINLF
EAEHPHYSLA ERIILLTIGY AIIAFGIYRF MKVLVKGKKP VMGTPRKIYK ILFEVSSTAK
VFFIFSIEIF FFPVYCGWLL DFCVAPLVLP QFTRKSPSGV DTFVVLVSSY YDSLQETYLR
VLMYWSSGTL YMLLFALFVG MVRTNILRPG VLFFIRSPDD PNARLIHDAL VKPLMLQLSR
IYLSAKVYTG FIIIGIGGVT WGLRHILSTT KGTIFLPIQS SSVFFDIILC VLATRSLVSQ
QWALEYCQLY WTRVFEISCH KLRLSHFILG KPISQERGYT VYRNIFQTIM ATAQPDFTSP
VSYRQAQEIF KSNPNVNACF VPDGNYIRAP DSDTVSRKFV KKLFVSVTKD DKLLTAAEIN
TAPSAYETPS SEAEDELSTD NSYTIVYRPP HFKMRCLALI CMLWVFAVII TMAVTFGALL
SGRMILIVAS YTADSKLYDA MVKRQYRFDI PCLAIGLLLE FTLLYQFDQG RPQQQLGNQR
NAGNEFRFDQ FQERFRKELT YVCVIGSFLL WALWVQGVHI LCVDRPIRFL FNTPDGPFIV
DKFSIPVHFL VSFWTFLPFI YYVMNSTRFV RIENNNDGEF DIARILSACG FYQALINIAI
VVVPTASLNF YLSYLGKPAD DSRRIYMFPL AYFFFIVAKS IHEAYRFYSR VNDQVKNERY
VRGRAIENVE ISDNEQ
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