Gene PICST_36611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_36611 
Symbol 
ID4840100 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp466213 
End bp467232 
Gene Length1020 bp 
Protein Length176 aa 
Translation table12 
GC content40% 
IMG OID640391415 
Productpredicted protein 
Protein accessionXP_001385776 
Protein GI126138506 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2163] Ribosomal protein L14E/L6E/L27E 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.264026 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAAA TTGTATGTTA TAAGTATATC AGAAGGCTAT AGAAGGGATA CAGACTACTG 
GTGTTATCCA CGCATCGTTG GTTTGATTGA AAACAGACAT CTGGAAGTGG ATTATTGAAG
ATGAAAAACC CAGTTGAAGA TTCTTGTATC GAATAAAAGT AAGACACGAA TGTCAGAGCA
AACAACATCA GAACAACTCC ATATTGCATC AAGACTTATC TACCAAGAAT ATCCCAGTGC
TTTTGAGAAA GTTGTCTCTA TTCACAAATC TTTTGACTGT AGCAAACCGA GTTGAAAAAT
TTTCAGATTC ATTATCTCGA AGAGGACTAA TATATTAATC TTCTCGATTG AAAGATATAA
AACTGCAGCT ACTAGAATAA AAGGACACTT ATTTATTCGC TCCAAAAAGA TTTTCAATAA
CTTTCGATCC ATGCCAATCA CCAGTAGATT CTCAAATAGC CAAATATTAA TCACGAAGAA
CAATTACTAA CATTTTTATA GGCTCCAAAG TGGTACCAAT CGGAAGACGT TCCAGCTCCA
AAGCAAACCA GAAAGACTGC TCGTCCACAA AAGTTGCGTG CCTCGTTAGT TCCAGGTACC
GTCTTGATTT TGTTGGCCGG TAGATTCAGA GGTAAGAGAG TCGTCTACTT GAAGAACTTG
GAAGACAACA CCTTGTTGGT TTCCGGTCCA TTCAAGATCA ATGGTGTTCC ATTGAGAAGA
GTCAACGCTC GTTACGTCAT TGCTACTTCC ACCCAGGTTT CCGTCGAAGG TGTTGACGTT
TCTAAGTTCA ACGTCGAATA CTTTGCCAGA GAAAAGACCC CAAGATCCAA GAAGTCCGAA
GCTGACTTGT TCAACGAAGC TCAACCAAAG AAAGAAATCA AGGCTGAAAG AGTCGCCGAC
CAAAAGTCTG TTGACGCTGC TTTGTTAGCT GAAATCAAGA AGACCCCATT ATTAAAGCAA
TACTTATCCG CTTCTTTCTC CTTGAAGAAC GGTGACCGTC CACACTTATT GAAGTTCTAA
 
Protein sequence
MSQIAPKWYQ SEDVPAPKQT RKTARPQKLR ASLVPGTVLI LLAGRFRGKR VVYLKNLEDN 
TLLVSGPFKI NGVPLRRVNA RYVIATSTQV SVEGVDVSKF NVEYFAREKT PRSKKSEADL
FNEAQPKKEI KAERVADQKS VDAALLAEIK KTPLLKQYLS ASFSLKNGDR PHLLKF