| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_36549 |
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| Symbol | RIA1 |
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| ID | 4840118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 247421 |
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| End bp | 250528 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640391433 |
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| Product | Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins |
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| Protein accession | XP_001385385 |
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| Protein GI | 150865957 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0480] Translation elongation factors (GTPases) |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.346459 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00970244 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGGCTAT CCGAGGAGAC GGTAAACAAG CTCCAGCTGA ATGCTTCGTG CATTAGAAAT
ATTTGTATTT TGGCCCATGT GGACCACGGC AAAACTTCAT TGAGTGATTC TCTATTAGCT
ACCAACGGAA TCATCTCACA GAGAATGGCA GGAAAAGTCA GGTATCTAGA CTCAAGAGAG
GATGAACAGC TCAGAGGTAT TACTATGGAA TCCTCGGCGA TCTCATTGTA CTTCAAAGTT
ATGCGCAGAA AGAAAGACTC AGACGAAACT GAGATCAAAG AGCATTTAAT CAACTTGATT
GACTCGCCCG GCCATATCGA TTTCTCATCC GAAGTATCTA CCTCTTCGAG ATTATGTGAT
GGTGCCGTTG TATTAGTCGA TGTAGTCGAG GGAGTATGTT CTCAGACTGT TAATGTGCTC
AGACAATGTT GGGTAGACAA GTTGAAGCCA ATGTTGGTGA TAAATAAAAT CGATCGTTTG
ATCACAGAAT GGAAGATGTC TCCTTTAGAA GCATATCAGC ATATATCCAG AGTTATTGAA
CAGGTGAACT CTGTTATTGG TTCATTCTTC GCTGGTGACA GAATGGAAGA CGATATGATC
TGGAGAGAAA GTGGGGCCGA AGGAGAATTC GTTGAAAAGG ATGATGAAGA GTTGTATTTC
ACTCCAGAAA AGAACAACGT AGTTTTTGCA TCTGCTGTGG ATGGCTGGGC TTTTAATGTA
AATACTTTTG CAAAGATTTA CCTGGCCAAA CTTGGCTTCT CTCATTCAGT TTTGTCCAAG
ACCTTATGGG GTGACTTTTA TTTGGACATG AAAAACAAAA AGATCATTCC TGGAAGTAAA
TTGAAAGCGT CTCAAGGTAA TTTGAAACCT TTATTTGTAT CCTTGATTCT TGAACAAATT
TGGGCTGTCT ACGAAAATTG CGTCATTGAA AGAAACCAGG AAAAGTTGGA AAGGATAATT
GAGAAATTGG GTGCAAAAAT TGGCCCAAGA GAATTGAGAT CGAAAGATTA CAAGAACTTA
TTGAACTTGA TCATGTCACA ATGGATCCCT ATTAGTCACG CTATTCTAGG CACAGTCATT
GAGTATTTGC CAAGTCCAAT TGTCGCTCAA CTGCAAAGAA TTGAAAAGAT CTTGGACGAA
AGTATCTACA ATGTTGTTGA AATTGAGACT GACAAGACAA AATTGGTTGA TGGCAACTTC
GACAAGTCAA TTCGTACGTG TGATTCATCA GATCCGGAGC ATCATACATT GGCATACGTA
TCTAAATTGT TGTCTATTCC AAATGAGGAT TTGCCAAGAG TTGGTACTTC TGCTGAATTA
ACTGCTGATG AGATAAAGGA AAGAGGCAGA ATTGCCAGAG AATTGGCTAA GAAAGCTTCT
GAGGCTGCTG CAGCTGCTCA AGGTTCTAAT ACTGATGAAT TCACTATCGT TAAAAAGGAT
CCTTTTGAAT GGGAATTTGA AGAAGAAGAC TTTGAAGAAG AAACAGAAGA AGAAGATCTT
GACGTTCAAA CGGAAACATT AGTCGGATTC ACTAGAATTT ATTCTGGTTC TTTGTCGAAA
GGACAAAAGA TTACTGTCAT TGGACCAAAG TATGATGCAT CCCTTCCTAA AGATTCTGAA
TCCAACAAAG AACAAATTGC TAAAGAAGTT GAAATTAAGG ATTTGTACTT AATCATGGGA
AGAGAATTGG TGCCAATGCA TACTGTCCCC GCTGGAAATA TTGTCGGGGT TGTTGGGCTT
GATGAAGCTG TTTTAAAGAA TGCCACTTTG TGTTCTGAAA TACTAGATGA CAAGCCGTAT
ATCAACTTGG CTTCGACGTC AACATTAATT CACAATAAGC CAATTATGAA GATTGCGGTT
GAACCAACCA ATCCTTCAAA ATTGACTAAG TTGGAAAGGG GGTTGGATCT TTTGTCCAAA
GCTGATCCAG TTTTGGAATG GTTCTTTGAT GATGACTCTG GTGAGTTGAT AATGTGTGTA
GCTGGTGAAC TTCACCTTGA AAGATGTCTC AAAGATCTAC AAGAAAGATT CGCCAAAGGT
TGTGAAGTCA TTGTCAAAGA ACCTGTTATT CCATTTAGGG AAGGCTTAGC TGATGACAGG
AAGAACACTT CTAACATCGA TGAAAATGAC GATGAAGATG AAAAGAATTC ACTTGGTGTT
GATTTGGATT TCTCAGTCTC ACCTATGCCA AACAAAATCA CACAATTCTT GATTGACCAT
GAATCAGAAA TACAAACTAT TCAAAATAAG AAGCTTGCGA CCGAGGAGCA AGTAGGCTTA
TTCAAGAAGA AGTTCAAATC CGTCCTTGAT GAAGAGAAGT TTTACGCAGA ATTTGAAAAT
GTAGAAGATC TAGTTAACCA CTTGATAGCA TTTGGTCCTA AGAGAATTGG TCCTAACATT
TTTGTCGAGT CAAAGGGTAA TTCTCACAAG TTCACACACT TATTTGGAGA CAACGACTCT
TTGTCAAAGT TTGAATTCGA AAATAACGTT CTCAACGGTG TTCAGCTTGC ATTCAACGAA
GGGCCCTTGG CTTCAGAACC TTTACAGGGA GTAATTATCA CATTGAAGAG AAGTGAACAG
ATCATGGACG AGAATGGCGA ACCTGTTAGA GCTATCAATC AAGGTAGAAT CATTGTCCAT
ACTCGTAACT TGATTCACAA GGAATTCTTA TTGAAGTCTC CAAGATTGTT CCTTGCTATG
TACACTTGTG ATATCCAAGC TACTTCTGAA GTCTTAGGTA AGGTTTACGC TGTTGTTCAA
CGTACGGGCG GTTCTATCAT TTCTGAGGAA ATGAAGGAGG GTACTCCATT TTTCACCATT
GAGGCCAGAA TTCCTGTTGT TGAAGCCTTT GGGTTTTCAG AAGACATACG TAAAAAGACA
TCCGGTGCTG CTAGTCCTCA GTTGGTTTTC GCCGGTTATG ACATGTTGGA TATAGATCCG
TATTGGGTTC CACATACCGA AGAAGAACTT GAGGACCTAG GCGAGTTTGC TGAAAGAGAA
AATGTGGCCA GGAGATACAT GAACACTATA AGAAGAAGGA AGGGCTTGTT TGTAGACGAA
AAGGTTGTCA AGAACGCTGA AAAGCAGAGA ACAATGAGAA AGGATTAG
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| Protein sequence | MRLSEETVNK LQSNASCIRN ICILAHVDHG KTSLSDSLLA TNGIISQRMA GKVRYLDSRE
DEQLRGITME SSAISLYFKV MRRKKDSDET EIKEHLINLI DSPGHIDFSS EVSTSSRLCD
GAVVLVDVVE GVCSQTVNVL RQCWVDKLKP MLVINKIDRL ITEWKMSPLE AYQHISRVIE
QVNSVIGSFF AGDRMEDDMI WRESGAEGEF VEKDDEELYF TPEKNNVVFA SAVDGWAFNV
NTFAKIYSAK LGFSHSVLSK TLWGDFYLDM KNKKIIPGSK LKASQGNLKP LFVSLILEQI
WAVYENCVIE RNQEKLERII EKLGAKIGPR ELRSKDYKNL LNLIMSQWIP ISHAILGTVI
EYLPSPIVAQ SQRIEKILDE SIYNVVEIET DKTKLVDGNF DKSIRTCDSS DPEHHTLAYV
SKLLSIPNED LPRVGTSAEL TADEIKERGR IARELAKKAS EAAAAAQGSN TDEFTIVKKD
PFEWEFEEED FEEETEEEDL DVQTETLVGF TRIYSGSLSK GQKITVIGPK YDASLPKDSE
SNKEQIAKEV EIKDLYLIMG RELVPMHTVP AGNIVGVVGL DEAVLKNATL CSEILDDKPY
INLASTSTLI HNKPIMKIAV EPTNPSKLTK LERGLDLLSK ADPVLEWFFD DDSGELIMCV
AGELHLERCL KDLQERFAKG CEVIVKEPVI PFREGLADDR KNTSNIDEND DEDEKNSLGV
DLDFSVSPMP NKITQFLIDH ESEIQTIQNK KLATEEQVGL FKKKFKSVLD EEKFYAEFEN
VEDLVNHLIA FGPKRIGPNI FVESKGNSHK FTHLFGDNDS LSKFEFENNV LNGVQLAFNE
GPLASEPLQG VIITLKRSEQ IMDENGEPVR AINQGRIIVH TRNLIHKEFL LKSPRLFLAM
YTCDIQATSE VLGKVYAVVQ RTGGSIISEE MKEGTPFFTI EARIPVVEAF GFSEDIRKKT
SGAASPQLVF AGYDMLDIDP YWVPHTEEEL EDLGEFAERE NVARRYMNTI RRRKGLFVDE
KVVKNAEKQR TMRKD
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