Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_32908 |
Symbol | UFD4 |
ID | 4840071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | - |
Start bp | 931859 |
End bp | 936967 |
Gene Length | 5109 bp |
Protein Length | 1702 aa |
Translation table | 12 |
GC content | 39% |
IMG OID | 640391386 |
Product | ubiquitin--protein ligase |
Protein accession | XP_001385872 |
Protein GI | 150866319 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5021] Ubiquitin-protein ligase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0606502 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.132207 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTAATA CCAAACCCAG CCAGATCGGT GCCGAGGATT CTGGCAACCA AAGGGAGAAT TCGCCAGACG TCGCCTACCA TTCTGCCAAC GAAGAACAAG ATGATAATGG CATCGATGAT GATGAAGATG ACTCTTTACA GAGACTTTCG GAACAAGCCC AAAGGCGAAG ACTGAGCCAA AGAGGCTTCC ACGATGAACA CGTTAGAGAT ACTTACGAAG ATACTGACGA ACACGATGAT GACGACGCTG AAGGCGTCAG TGGTGGTAAT GACGACATGA GCGACGTAGA TGCAATGGAA CCCGGTGACT TCTTGAGAAG ACTAATTCAA CCAAGGTTGA GTAGGAGTGC CAGTTCGAGA AATGAACAAG ATCACAGCAG TACCGGAAGC GCTGGAGACG AGGACGAAGC AATGGATGAA GATGATCCTC GAGCCGAGTT TTTGCGTGCC ATTGGATCTT TATCTTCGTC AGGGAGTGGT TCACATTTGT CTTCTGGTAG CGGCCAGGTT TTTGTTGACG TAGTGCAAAG GCTAATGGGC GGTGGAATAA TGTTTGGAGG AGGAATGAAT AGGGAAAGTA GTGAAATTGA TGGATTGATC AACAACTTGA ACCAAAGAGA AGATTCGTAC ATAATTCTTG AAACTTTAAA CGAGCTATCA GAGAGATTAC TTATGATGAA TGGTATCACA GCAGAACGCC TTATTCCTGC TAACAAGTTG GCCAAGAGCT TGGTAAATAT AATGGAAGAT ACAAATTTGT CGGAAGAGCT AGAGATACAA CTTGTTACTT GTCGTTGTCT CTATAATTTT CTAGAGGTCA ATCAGGATTT TGTCCATGAT GCCCTCAACA ACCATGCAAT TGAAGCTTTG TGCACCAAGC TCATGGAGGT AAGCTATATT GACTTAACAG AACAAGCTTT GCAAACACTA GAGATGATTT CTCGTGATCC CATTTCTCAC AACAGTATTA TTGCCAACAA TGGTCTAAGA GCATGCCTAC AATACATGGA TTTTTTGACC ATTCATGCCC AAAGGAAGTG CTTGTCAGTT GTATCCAATT CTTGTACAAA TATTACAGTT GCAAACTTCC AGAAGGTAAA GGACATCATG GATAATATCT CTGAAGTTGT CAGAAGTCAC ACTGATTCCG TGGTTGTGGA GAATGCATGG CTAACCATTT CTCGAATCAT TATCAGCTTC AAGACCAAGC CCGAGTTGTT AGAGGAATTA TTTCTGAACA AAGAATTATT GTTGAAAGAT TTCACACAGG TTATTTACAT CAGTTGCAAC AAGTCACTGA ATACATCATC TGAAAATGAT TCGTCCAAAG TTGCATTAAA TTACAGTTCG TGCTTAAGTT TAATCAAATC TTTGATAATC TTGAGTAGCA CCGGTGTTGA AATCTCTAGA ATCTTGTTGA GCGAATGCTC GATAGGGGAG GTTATCGTCA AATCTCTTAA CAAATACTCT AAGTTTAAAT CTAATACGTC TCAATCTGAG AATGCAAATT TGGACCAATC ATTTATAAAG ACTACCAATG AATCAATATC AATCGAAGCT TTAATGGCTG CTCCCAAAGA GCTCCTTTCG CAGTTTCTCA ATTTGATCGG CTATTTATTG CCAATCAGCT ATTCCCCTAG CGAAACCCCA TTCTTGCGAA ATAACCATGA CGACTTCGAA GAAAAGCAGA AATTGAATAA GTCTAGAGTT GAACTATGTA AGGATATCAT TCCAAGACAA TACTGCGATT TTGTTAATGA CATTTGGCAT TTACTCATGT GTAGTTTCCA AGCTACAATG GATTATGAAA TTCGCAGAAA AGTTTTCATT GATATTTTTA GAATTGTCAG CTTCAGTTCA GAATCCAACT TAAGCAAAAT AAAAGATGTC AACTTGATCA CAAATATATT GGCATCGGTT GCCAACCAAA GTAAAGCACT GATTGGACGC AACTTCTCCA ATACGGCACG CTTAGCAAAA TTGTTTTCTA AGGAGGAGGA TCTAGACATG TTAAGCAGCG ACGACGAGAC ATTTGAAGGA AATTTGGATG AGCATGATGC AATTGTGAAC GAAGATGAAG AGGAAATTGC AGGAATTGAA GAAGAAATCG ACGAAGGGTT GTTGCAAGAA GACGCGGATA ATATTGAAGA AGAAGATTCT TTTGATGACA ACGACAATGA GGACGAAGAA GATCACGATG AAAATGATGA TCGTGAAGAT GATGAGGATG AAGACGAATA CGAAGAAGTC GGCGGATTAC CATATCCTCA AACTGAGAAT TCAGCGGATG ATATATCAAA ATTGAATTCA AACGTTCTAC TACTTAGTGG ATTGCTTATT GCAAGGCTTC TTATTGAAAA AGCACCTCAA ACATTCCTTC CTGATTTCGA AAGGGAGGGC TTAATTAGTG ATGTTTTACT GATTGTCAAA AGTTTGACGG GTAATGTCGA AGAAGAAGAG GCAACAGGAA GCAGTACAAG AGTTCATTCC ATTTCTGCAA GCTACAGCAA CAAATACATT GATACAGAAT TCACAAAAGA GTACGAATAT AAATTGACAA ATAGTTCCAT ACTATACAAG ATTTACAATG TTTGCTCCAT TATCGAAAAG TCATACCTAA AACTTAAGTT CAGTGGCAAT TCATCTATTC CTGAGCACAT GCAAATATTA AATGAGATAG ACTCGAAACT CAGAGATCAC AAGTACTTAA AGACCCTCTC TTTTGACGAA TGGAAGTTGA TTTGGGACAA ATTAGAATTT GCTCTCAATG GTGCATCTTC CAATATTCAA ATTTCTAGTT TTGAATTGAT TTCATCGGGA ATTATTGAGT CTTTGTCTCA AGTCTTCAAT TCAGAATCCT ATGATTTTGG ATTTGAATTC AGCGATTGTT ACAAAGCTTT CATTTCAGTT TTCTTTGTGG ACAAAGCGCG AGGTTCATCC TCATTCTTAG CATCACTTCA GGAAGCTCTT ACAAGGACCG AATCGTTTCA AATTATCTCT TCTGGAAGTT CCAGTATTGT TAGTCTAGGT TCGTTTTTCC AGAATGATAA TAGCCAAACT GCTATCATGG CCAAGCAAAT CAAATTGAAG TTGGTTGCAT CGGAAAATGA AACTGACAGC AAATTACCTT CAAACATGGA AAACATGATT CTCTCTGTTC ATGCAATTGC TACTTTCAAG TCAGTTGACA CCTATTTGAA GCAAAGGTTT AAATTTATTG AAGAACTTAG TGGAAGAAGA GATCGCTCAA ACGGCGATCT TGGAAATGAC GACGAAGACG TCTCGAAGAG GAATCCTTTT AACATCGAAT TCTTAATCAA CGGCGAATCA GTTCCCAATG AGATTACCAT TTATGGTGCG ATTTATAGGT CATTGCAGAA CAAGCCGGAT GAAATTGTTG ATCCATCAAG AATATGGTCA ACTGTTCATA ATATATCATA CAGAAGAATT AGCTCTGCAG TGACTAAGGA AAGTAAATTA ATGAACTACA GTTTCCATAT CAAGGACAAT GAATTAGACA TCTATGACAA GACAACGATC TATATCCTCA AATTGTTGAA GGTCTTGTTC GAGATGAATG CATTTGTGAA GATCAATATT CCTAATACAG TTGCAATTCC AGCCAGTAAT TTCATGAACT GGAAGCTCAC AGTTAAATTA AACAGACAGT TGGAAGAACC CTTGGTTGTT GCCAGCGGTA CACTACCTGG TTGGAGCATC CATGTTACGA AGCAATTTCC GTTCATTTTT CCTTTGGAAA CTAGAATATT CTTTTTGCAG TCTACGTCAT TTGGTTACTC TCGGTTGATT CATCAATGGC AAATTAGGAC GAACCAAGGA AACGATGAGA ATAATACAAA TAATAACAAC AATCAAAGAG CACAGTTAGG TCGTCCAACC AGACACAAGG TGAGAATATC TAGAAAATTT ATACTTCAGA GCGCAATTAA AGTTCTCGGT CTTTATGGCT CCACCCCCAG AATTTTGGAA ATTGAATATT TCGACGAGGT AGGATCAGGT TTGGGGCCAA CATTGGAATT CTACGCAACT GTCTCCAAAG AGTTCTCGAA GAAGAAATTG AAGCTATGGA GAGATAATGA CCCACTGGAA GTTGATGATG AGGCATATGT TTCAAATGCC TTAGGTTTAT TCCCTTCCCC ATTGGACAAA CACCAGATTT CTACTGAAAA TGGTAGAAAG GTATTGTCTT TCTTCTCGTC ATTGGGAAAA TTTGTCGCTA GAGCGTTGCT AGATTCTAGA ATCGTGGATT TTAACTTTAA TCCAGTTTTC TTGAAATTGG TGCAGTACTT CAACCTCCAC GGCGTACAGA GGATAAATCA CAGGAACTTA AAGAAAATGA CAAATATTTC TAGTTTGAGA ATGGTTGATC CAGCCTTGGC TGATTCAGTT GAACATTTGC TTAAGTATGT GAAACAATTT CCACAAGTTG GAGAGATAGA ACGCGATTCC ATCGTGATTG ATGGCTCTAC CATTAAGGAC TTATCACTTT ACTTTGAATT GCCTGGGTAC CCTGAGTTTG AATTGATTGC TGGTGGTAGC GAGATACAAG TTACTGCAAC AAATCTTGAG TTGTATATCA ATAGAATTTT GGAGTCTACC CTTTTCACTG GAATTGTGCA TCAAGCCAAA TCATTTATGG ACGGATTTTC AAACGTATTC CCTGTAAATA CGTTAATAAT ATTCTCGTCA GAGGAATTGG CTGGTTTGTT TGGTGGAGCA GAAGAAGATT GGTCAATTGA TACTATTACT TCAGCTGTGT ATGCAAATCA CGGGTTTACA AAGGAATCTG ATGCTATCAA ATCGCTAATA ACAATACTCG TGCAATTTAA CGAAGAAGAA CGCAGAGCAT TCTTACAATT CCTTACTGGA GCACCAAAAT TGCCTATTGG CGGCTTCAAG GCTCTTAGAC CGGAGCTCAC GGTTGTTAGA AAGCATGCTG AAGAAGGCTT GAAGGATGAT GATTACTTAC CGAGTGTGAT GACTTGTGCA AATTACCTCA AGCTCCCGAA TTATTCATCA GAAGACCTCA TGAGGAAAAG ATTGCTTCAA GCTATTAATG AAGGCGCTGG TGCTTTCTTG CTCTCCTAG
|
Protein sequence | MANTKPSQIG AEDSGNQREN SPDVAYHSAN EEQDDNGIDD DEDDSLQRLS EQAQRRRSSQ RGFHDEHVRD TYEDTDEHDD DDAEGVSGGN DDMSDVDAME PGDFLRRLIQ PRLSRSASSR NEQDHSSTGS AGDEDEAMDE DDPRAEFLRA IGSLSSSGSG SHLSSGSGQV FVDVVQRLMG GGIMFGGGMN RESSEIDGLI NNLNQREDSY IILETLNELS ERLLMMNGIT AERLIPANKL AKSLVNIMED TNLSEELEIQ LVTCRCLYNF LEVNQDFVHD ALNNHAIEAL CTKLMEVSYI DLTEQALQTL EMISRDPISH NSIIANNGLR ACLQYMDFLT IHAQRKCLSV VSNSCTNITV ANFQKVKDIM DNISEVVRSH TDSVVVENAW LTISRIIISF KTKPELLEEL FSNKELLLKD FTQVIYISCN KSSNTSSEND SSKVALNYSS CLSLIKSLII LSSTGVEISR ILLSECSIGE VIVKSLNKYS KFKSNTSQSE NANLDQSFIK TTNESISIEA LMAAPKELLS QFLNLIGYLL PISYSPSETP FLRNNHDDFE EKQKLNKSRV ELCKDIIPRQ YCDFVNDIWH LLMCSFQATM DYEIRRKVFI DIFRIVSFSS ESNLSKIKDV NLITNILASV ANQSKASIGR NFSNTARLAK LFSKEEDLDM LSSDDETFEG NLDEHDAIVN EDEEEIAGIE EEIDEGLLQE DADNIEEEDS FDDNDNEDEE DHDENDDRED DEDEDEYEEV GGLPYPQTEN SADDISKLNS NVLLLSGLLI ARLLIEKAPQ TFLPDFEREG LISDVLSIVK SLTGNVEEEE ATGSSTRVHS ISASYSNKYI DTEFTKEYEY KLTNSSILYK IYNVCSIIEK SYLKLKFSGN SSIPEHMQIL NEIDSKLRDH KYLKTLSFDE WKLIWDKLEF ALNGASSNIQ ISSFELISSG IIESLSQVFN SESYDFGFEF SDCYKAFISV FFVDKARGSS SFLASLQEAL TRTESFQIIS SGSSSIVSLG SFFQNDNSQT AIMAKQIKLK LVASENETDS KLPSNMENMI LSVHAIATFK SVDTYLKQRF KFIEELSGRR DRSNGDLGND DEDVSKRNPF NIEFLINGES VPNEITIYGA IYRSLQNKPD EIVDPSRIWS TVHNISYRRI SSAVTKESKL MNYSFHIKDN ELDIYDKTTI YILKLLKVLF EMNAFVKINI PNTVAIPASN FMNWKLTVKL NRQLEEPLVV ASGTLPGWSI HVTKQFPFIF PLETRIFFLQ STSFGYSRLI HQWQIRTNQG NDENNTNNNN NQRAQLGRPT RHKVRISRKF ILQSAIKVLG LYGSTPRILE IEYFDEVGSG LGPTLEFYAT VSKEFSKKKL KLWRDNDPSE VDDEAYVSNA LGLFPSPLDK HQISTENGRK VLSFFSSLGK FVARALLDSR IVDFNFNPVF LKLVQYFNLH GVQRINHRNL KKMTNISSLR MVDPALADSV EHLLKYVKQF PQVGEIERDS IVIDGSTIKD LSLYFELPGY PEFELIAGGS EIQVTATNLE LYINRILEST LFTGIVHQAK SFMDGFSNVF PVNTLIIFSS EELAGLFGGA EEDWSIDTIT SAVYANHGFT KESDAIKSLI TILVQFNEEE RRAFLQFLTG APKLPIGGFK ALRPELTVVR KHAEEGLKDD DYLPSVMTCA NYLKLPNYSS EDLMRKRLLQ AINEGAGAFL LS
|
| |