| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32908 |
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| Symbol | UFD4 |
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| ID | 4840071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 931859 |
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| End bp | 936967 |
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| Gene Length | 5109 bp |
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| Protein Length | 1702 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640391386 |
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| Product | ubiquitin--protein ligase |
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| Protein accession | XP_001385872 |
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| Protein GI | 150866319 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG5021] Ubiquitin-protein ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0606502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.132207 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAATA CCAAACCCAG CCAGATCGGT GCCGAGGATT CTGGCAACCA AAGGGAGAAT
TCGCCAGACG TCGCCTACCA TTCTGCCAAC GAAGAACAAG ATGATAATGG CATCGATGAT
GATGAAGATG ACTCTTTACA GAGACTTTCG GAACAAGCCC AAAGGCGAAG ACTGAGCCAA
AGAGGCTTCC ACGATGAACA CGTTAGAGAT ACTTACGAAG ATACTGACGA ACACGATGAT
GACGACGCTG AAGGCGTCAG TGGTGGTAAT GACGACATGA GCGACGTAGA TGCAATGGAA
CCCGGTGACT TCTTGAGAAG ACTAATTCAA CCAAGGTTGA GTAGGAGTGC CAGTTCGAGA
AATGAACAAG ATCACAGCAG TACCGGAAGC GCTGGAGACG AGGACGAAGC AATGGATGAA
GATGATCCTC GAGCCGAGTT TTTGCGTGCC ATTGGATCTT TATCTTCGTC AGGGAGTGGT
TCACATTTGT CTTCTGGTAG CGGCCAGGTT TTTGTTGACG TAGTGCAAAG GCTAATGGGC
GGTGGAATAA TGTTTGGAGG AGGAATGAAT AGGGAAAGTA GTGAAATTGA TGGATTGATC
AACAACTTGA ACCAAAGAGA AGATTCGTAC ATAATTCTTG AAACTTTAAA CGAGCTATCA
GAGAGATTAC TTATGATGAA TGGTATCACA GCAGAACGCC TTATTCCTGC TAACAAGTTG
GCCAAGAGCT TGGTAAATAT AATGGAAGAT ACAAATTTGT CGGAAGAGCT AGAGATACAA
CTTGTTACTT GTCGTTGTCT CTATAATTTT CTAGAGGTCA ATCAGGATTT TGTCCATGAT
GCCCTCAACA ACCATGCAAT TGAAGCTTTG TGCACCAAGC TCATGGAGGT AAGCTATATT
GACTTAACAG AACAAGCTTT GCAAACACTA GAGATGATTT CTCGTGATCC CATTTCTCAC
AACAGTATTA TTGCCAACAA TGGTCTAAGA GCATGCCTAC AATACATGGA TTTTTTGACC
ATTCATGCCC AAAGGAAGTG CTTGTCAGTT GTATCCAATT CTTGTACAAA TATTACAGTT
GCAAACTTCC AGAAGGTAAA GGACATCATG GATAATATCT CTGAAGTTGT CAGAAGTCAC
ACTGATTCCG TGGTTGTGGA GAATGCATGG CTAACCATTT CTCGAATCAT TATCAGCTTC
AAGACCAAGC CCGAGTTGTT AGAGGAATTA TTTCTGAACA AAGAATTATT GTTGAAAGAT
TTCACACAGG TTATTTACAT CAGTTGCAAC AAGTCACTGA ATACATCATC TGAAAATGAT
TCGTCCAAAG TTGCATTAAA TTACAGTTCG TGCTTAAGTT TAATCAAATC TTTGATAATC
TTGAGTAGCA CCGGTGTTGA AATCTCTAGA ATCTTGTTGA GCGAATGCTC GATAGGGGAG
GTTATCGTCA AATCTCTTAA CAAATACTCT AAGTTTAAAT CTAATACGTC TCAATCTGAG
AATGCAAATT TGGACCAATC ATTTATAAAG ACTACCAATG AATCAATATC AATCGAAGCT
TTAATGGCTG CTCCCAAAGA GCTCCTTTCG CAGTTTCTCA ATTTGATCGG CTATTTATTG
CCAATCAGCT ATTCCCCTAG CGAAACCCCA TTCTTGCGAA ATAACCATGA CGACTTCGAA
GAAAAGCAGA AATTGAATAA GTCTAGAGTT GAACTATGTA AGGATATCAT TCCAAGACAA
TACTGCGATT TTGTTAATGA CATTTGGCAT TTACTCATGT GTAGTTTCCA AGCTACAATG
GATTATGAAA TTCGCAGAAA AGTTTTCATT GATATTTTTA GAATTGTCAG CTTCAGTTCA
GAATCCAACT TAAGCAAAAT AAAAGATGTC AACTTGATCA CAAATATATT GGCATCGGTT
GCCAACCAAA GTAAAGCACT GATTGGACGC AACTTCTCCA ATACGGCACG CTTAGCAAAA
TTGTTTTCTA AGGAGGAGGA TCTAGACATG TTAAGCAGCG ACGACGAGAC ATTTGAAGGA
AATTTGGATG AGCATGATGC AATTGTGAAC GAAGATGAAG AGGAAATTGC AGGAATTGAA
GAAGAAATCG ACGAAGGGTT GTTGCAAGAA GACGCGGATA ATATTGAAGA AGAAGATTCT
TTTGATGACA ACGACAATGA GGACGAAGAA GATCACGATG AAAATGATGA TCGTGAAGAT
GATGAGGATG AAGACGAATA CGAAGAAGTC GGCGGATTAC CATATCCTCA AACTGAGAAT
TCAGCGGATG ATATATCAAA ATTGAATTCA AACGTTCTAC TACTTAGTGG ATTGCTTATT
GCAAGGCTTC TTATTGAAAA AGCACCTCAA ACATTCCTTC CTGATTTCGA AAGGGAGGGC
TTAATTAGTG ATGTTTTACT GATTGTCAAA AGTTTGACGG GTAATGTCGA AGAAGAAGAG
GCAACAGGAA GCAGTACAAG AGTTCATTCC ATTTCTGCAA GCTACAGCAA CAAATACATT
GATACAGAAT TCACAAAAGA GTACGAATAT AAATTGACAA ATAGTTCCAT ACTATACAAG
ATTTACAATG TTTGCTCCAT TATCGAAAAG TCATACCTAA AACTTAAGTT CAGTGGCAAT
TCATCTATTC CTGAGCACAT GCAAATATTA AATGAGATAG ACTCGAAACT CAGAGATCAC
AAGTACTTAA AGACCCTCTC TTTTGACGAA TGGAAGTTGA TTTGGGACAA ATTAGAATTT
GCTCTCAATG GTGCATCTTC CAATATTCAA ATTTCTAGTT TTGAATTGAT TTCATCGGGA
ATTATTGAGT CTTTGTCTCA AGTCTTCAAT TCAGAATCCT ATGATTTTGG ATTTGAATTC
AGCGATTGTT ACAAAGCTTT CATTTCAGTT TTCTTTGTGG ACAAAGCGCG AGGTTCATCC
TCATTCTTAG CATCACTTCA GGAAGCTCTT ACAAGGACCG AATCGTTTCA AATTATCTCT
TCTGGAAGTT CCAGTATTGT TAGTCTAGGT TCGTTTTTCC AGAATGATAA TAGCCAAACT
GCTATCATGG CCAAGCAAAT CAAATTGAAG TTGGTTGCAT CGGAAAATGA AACTGACAGC
AAATTACCTT CAAACATGGA AAACATGATT CTCTCTGTTC ATGCAATTGC TACTTTCAAG
TCAGTTGACA CCTATTTGAA GCAAAGGTTT AAATTTATTG AAGAACTTAG TGGAAGAAGA
GATCGCTCAA ACGGCGATCT TGGAAATGAC GACGAAGACG TCTCGAAGAG GAATCCTTTT
AACATCGAAT TCTTAATCAA CGGCGAATCA GTTCCCAATG AGATTACCAT TTATGGTGCG
ATTTATAGGT CATTGCAGAA CAAGCCGGAT GAAATTGTTG ATCCATCAAG AATATGGTCA
ACTGTTCATA ATATATCATA CAGAAGAATT AGCTCTGCAG TGACTAAGGA AAGTAAATTA
ATGAACTACA GTTTCCATAT CAAGGACAAT GAATTAGACA TCTATGACAA GACAACGATC
TATATCCTCA AATTGTTGAA GGTCTTGTTC GAGATGAATG CATTTGTGAA GATCAATATT
CCTAATACAG TTGCAATTCC AGCCAGTAAT TTCATGAACT GGAAGCTCAC AGTTAAATTA
AACAGACAGT TGGAAGAACC CTTGGTTGTT GCCAGCGGTA CACTACCTGG TTGGAGCATC
CATGTTACGA AGCAATTTCC GTTCATTTTT CCTTTGGAAA CTAGAATATT CTTTTTGCAG
TCTACGTCAT TTGGTTACTC TCGGTTGATT CATCAATGGC AAATTAGGAC GAACCAAGGA
AACGATGAGA ATAATACAAA TAATAACAAC AATCAAAGAG CACAGTTAGG TCGTCCAACC
AGACACAAGG TGAGAATATC TAGAAAATTT ATACTTCAGA GCGCAATTAA AGTTCTCGGT
CTTTATGGCT CCACCCCCAG AATTTTGGAA ATTGAATATT TCGACGAGGT AGGATCAGGT
TTGGGGCCAA CATTGGAATT CTACGCAACT GTCTCCAAAG AGTTCTCGAA GAAGAAATTG
AAGCTATGGA GAGATAATGA CCCACTGGAA GTTGATGATG AGGCATATGT TTCAAATGCC
TTAGGTTTAT TCCCTTCCCC ATTGGACAAA CACCAGATTT CTACTGAAAA TGGTAGAAAG
GTATTGTCTT TCTTCTCGTC ATTGGGAAAA TTTGTCGCTA GAGCGTTGCT AGATTCTAGA
ATCGTGGATT TTAACTTTAA TCCAGTTTTC TTGAAATTGG TGCAGTACTT CAACCTCCAC
GGCGTACAGA GGATAAATCA CAGGAACTTA AAGAAAATGA CAAATATTTC TAGTTTGAGA
ATGGTTGATC CAGCCTTGGC TGATTCAGTT GAACATTTGC TTAAGTATGT GAAACAATTT
CCACAAGTTG GAGAGATAGA ACGCGATTCC ATCGTGATTG ATGGCTCTAC CATTAAGGAC
TTATCACTTT ACTTTGAATT GCCTGGGTAC CCTGAGTTTG AATTGATTGC TGGTGGTAGC
GAGATACAAG TTACTGCAAC AAATCTTGAG TTGTATATCA ATAGAATTTT GGAGTCTACC
CTTTTCACTG GAATTGTGCA TCAAGCCAAA TCATTTATGG ACGGATTTTC AAACGTATTC
CCTGTAAATA CGTTAATAAT ATTCTCGTCA GAGGAATTGG CTGGTTTGTT TGGTGGAGCA
GAAGAAGATT GGTCAATTGA TACTATTACT TCAGCTGTGT ATGCAAATCA CGGGTTTACA
AAGGAATCTG ATGCTATCAA ATCGCTAATA ACAATACTCG TGCAATTTAA CGAAGAAGAA
CGCAGAGCAT TCTTACAATT CCTTACTGGA GCACCAAAAT TGCCTATTGG CGGCTTCAAG
GCTCTTAGAC CGGAGCTCAC GGTTGTTAGA AAGCATGCTG AAGAAGGCTT GAAGGATGAT
GATTACTTAC CGAGTGTGAT GACTTGTGCA AATTACCTCA AGCTCCCGAA TTATTCATCA
GAAGACCTCA TGAGGAAAAG ATTGCTTCAA GCTATTAATG AAGGCGCTGG TGCTTTCTTG
CTCTCCTAG
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| Protein sequence | MANTKPSQIG AEDSGNQREN SPDVAYHSAN EEQDDNGIDD DEDDSLQRLS EQAQRRRSSQ
RGFHDEHVRD TYEDTDEHDD DDAEGVSGGN DDMSDVDAME PGDFLRRLIQ PRLSRSASSR
NEQDHSSTGS AGDEDEAMDE DDPRAEFLRA IGSLSSSGSG SHLSSGSGQV FVDVVQRLMG
GGIMFGGGMN RESSEIDGLI NNLNQREDSY IILETLNELS ERLLMMNGIT AERLIPANKL
AKSLVNIMED TNLSEELEIQ LVTCRCLYNF LEVNQDFVHD ALNNHAIEAL CTKLMEVSYI
DLTEQALQTL EMISRDPISH NSIIANNGLR ACLQYMDFLT IHAQRKCLSV VSNSCTNITV
ANFQKVKDIM DNISEVVRSH TDSVVVENAW LTISRIIISF KTKPELLEEL FSNKELLLKD
FTQVIYISCN KSSNTSSEND SSKVALNYSS CLSLIKSLII LSSTGVEISR ILLSECSIGE
VIVKSLNKYS KFKSNTSQSE NANLDQSFIK TTNESISIEA LMAAPKELLS QFLNLIGYLL
PISYSPSETP FLRNNHDDFE EKQKLNKSRV ELCKDIIPRQ YCDFVNDIWH LLMCSFQATM
DYEIRRKVFI DIFRIVSFSS ESNLSKIKDV NLITNILASV ANQSKASIGR NFSNTARLAK
LFSKEEDLDM LSSDDETFEG NLDEHDAIVN EDEEEIAGIE EEIDEGLLQE DADNIEEEDS
FDDNDNEDEE DHDENDDRED DEDEDEYEEV GGLPYPQTEN SADDISKLNS NVLLLSGLLI
ARLLIEKAPQ TFLPDFEREG LISDVLSIVK SLTGNVEEEE ATGSSTRVHS ISASYSNKYI
DTEFTKEYEY KLTNSSILYK IYNVCSIIEK SYLKLKFSGN SSIPEHMQIL NEIDSKLRDH
KYLKTLSFDE WKLIWDKLEF ALNGASSNIQ ISSFELISSG IIESLSQVFN SESYDFGFEF
SDCYKAFISV FFVDKARGSS SFLASLQEAL TRTESFQIIS SGSSSIVSLG SFFQNDNSQT
AIMAKQIKLK LVASENETDS KLPSNMENMI LSVHAIATFK SVDTYLKQRF KFIEELSGRR
DRSNGDLGND DEDVSKRNPF NIEFLINGES VPNEITIYGA IYRSLQNKPD EIVDPSRIWS
TVHNISYRRI SSAVTKESKL MNYSFHIKDN ELDIYDKTTI YILKLLKVLF EMNAFVKINI
PNTVAIPASN FMNWKLTVKL NRQLEEPLVV ASGTLPGWSI HVTKQFPFIF PLETRIFFLQ
STSFGYSRLI HQWQIRTNQG NDENNTNNNN NQRAQLGRPT RHKVRISRKF ILQSAIKVLG
LYGSTPRILE IEYFDEVGSG LGPTLEFYAT VSKEFSKKKL KLWRDNDPSE VDDEAYVSNA
LGLFPSPLDK HQISTENGRK VLSFFSSLGK FVARALLDSR IVDFNFNPVF LKLVQYFNLH
GVQRINHRNL KKMTNISSLR MVDPALADSV EHLLKYVKQF PQVGEIERDS IVIDGSTIKD
LSLYFELPGY PEFELIAGGS EIQVTATNLE LYINRILEST LFTGIVHQAK SFMDGFSNVF
PVNTLIIFSS EELAGLFGGA EEDWSIDTIT SAVYANHGFT KESDAIKSLI TILVQFNEEE
RRAFLQFLTG APKLPIGGFK ALRPELTVVR KHAEEGLKDD DYLPSVMTCA NYLKLPNYSS
EDLMRKRLLQ AINEGAGAFL LS
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