| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32879 |
|---|
| Symbol | |
|---|
| ID | 4840061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | - |
|---|
| Start bp | 852198 |
|---|
| End bp | 854054 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640391376 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001385862 |
|---|
| Protein GI | 150866313 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.134484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00551311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGACAATA TTACAGATAC CATAGCAGCT CCCTCGTTGG AGAATATCAC CTTTGCGTTT
AGCAACTTGT CCTATATCGA TCAGCTTGCT TACATCATTC CCCACAAGAT ATATTTGAAG
GACTCGCCAA TCATTCCTGA AGTGATCAAT GGAGCTCTAA TTTTGCTTGT TAGTATAGCG
ATCGTAATAG TAGGATCGTA TTCTACAGTA TCACGACCTT CGAACAGCGA AGACCCTCGT
TTGGACAGAA AATCTCCGTA CTGGGATCCA TCGGATGTGG ATAACACCGA ACACTTTGTA
GCCAACAAAA TGCAATTGTA CACATTGGGA GGCCAGAACT TGGGTTTAGT ACATGTATTG
CTTATGCCTC TATCCACAGC AGGAACGCTA TACTTCTTGA ACTATGTCAT GAACAACTGG
AATATCGACG ATATCAACTT GTGGTTGAAC AGATACATTT TAGCAGTGCT GTTGTTCTCC
ATATACGGTA GTTTGGAATA CGTTCTTGTT GCTTCTTCAA GAAAATTGTC CAAGCTTCTT
GGTGGACCCC TTAGCAATTC TAGCAATCTT TTCTGCAGAT ACCGTTTGAC ATTGACTGCC
GACAAGGACG ACAACTTTCC ATTGGGCAGA TTGGAGAACT TTGATGAAGA CGAATTCGTA
GAGAAGGAAT TGAAGAAAGA TCCAAAATGG AATGAAGCCT TTCAAAAGTA TTTGAGCGAG
GAGAAGATCG AAATTTTGCG TCCTACTTCA GTGAGAATAA TTCCTAAAGT AACTGAAAAT
ACCAATTGGA TCTTTGACTT GAAACCAGCA GTAATCCTTC CTTTAACAAT TGGCCTAATT
TACCTGTTCT ACAAATACAA CCCAATATTG AATTCTGAAT ATAACATGAA TGATATCAAC
TGGTTAGTTC TTGATTCCAT GGCTATTAAT TTTGCAATAT TTGGTATTCA AAAGATCAAA
TTTGGTCAAT TCAAGTATGG GTTCCTTTTG TTGTCTGGTC TTTTCTTCTA TGACATTTAC
TTTGTCTTTG GAACAGAGAT AATGGAAAAG GTTGCCACAG GATTGAATAT ACCAATGAAG
ATATTGCTTC CTCATCCAGG TAGCAGCTGG GGCGAGCCAT TGAAGTTCAG TTTGCTTGGA
TTGGGAGATA TCATTGTCCC AGGTACGGTT GCCTCTTTAT CGTTAAGATT TGACGTCTAC
CGTCACCACC AGAAGAATCC ATCTACAGCA TTCCACTACT TGACTCCAAT CGCAAAGCCT
TATTTTACTG CAGCAATTGT CTCTTATTTC ATTGGTCTTG CAGCTACGCT TGTTATGCTC
AATATTTTCC GCGTAGGCCA GCCAGCTTTG CTATATATAG TTCCTTCTCT TTTGGGAGGA
ATAACAATCA CTGGTCTTGC AAGAAGAGAA TTCACTGAAT TATGGGAATT TAAAGACGAG
ATCAAGCAGT TTGACGAGAA GGACTTCGAA AATGAAAATG AAAACTACAT AGAAGAGGAG
GATGAAGATT ACATTTTGAA CGAAGACGAA GCCTCATTTG ATGACTGGGT TGACCAAGTT
GAATTGGAGA GGGCCGGATC AGAAGATGAA ACTGATTTGG ATGAATTCAG AAAGTTTGCA
CCCAAAAGAT ACACAGCAGA AGATTTCGGC CCGGACGATG AAGAGGAAGA CGACGATACA
TTTGTGATTG GAGAAGGCAG CGACGACGAA CTTGACGACG ATGACGATAT CGAAGAAGAA
GAAGTCGAAT ACGAGGAAGA TGACGACGAA GCTGTAATCG AGGTTCTCGA GGAATTGCAA
GTTATTAGAG AGGATTTGAA CAGACAGCCA CAAAGATGGT ACAGTGACGA AGAGTAA
|
|---|
| Protein sequence | MDNITDTIAA PSLENITFAF SNLSYIDQLA YIIPHKIYLK DSPIIPEVIN GALILLVSIA
IVIVGSYSTV SRPSNSEDPR LDRKSPYWDP SDVDNTEHFV ANKMQLYTLG GQNLGLVHVL
LMPLSTAGTL YFLNYVMNNW NIDDINLWLN RYILAVSLFS IYGSLEYVLV ASSRKLSKLL
GGPLSNSSNL FCRYRLTLTA DKDDNFPLGR LENFDEDEFV EKELKKDPKW NEAFQKYLSE
EKIEILRPTS VRIIPKVTEN TNWIFDLKPA VILPLTIGLI YSFYKYNPIL NSEYNMNDIN
WLVLDSMAIN FAIFGIQKIK FGQFKYGFLL LSGLFFYDIY FVFGTEIMEK VATGLNIPMK
ILLPHPGSSW GEPLKFSLLG LGDIIVPGTV ASLSLRFDVY RHHQKNPSTA FHYLTPIAKP
YFTAAIVSYF IGLAATLVML NIFRVGQPAL LYIVPSLLGG ITITGLARRE FTELWEFKDE
IKQFDEKDFE NENENYIEEE DEDYILNEDE ASFDDWVDQV ELERAGSEDE TDLDEFRKFA
PKRYTAEDFG PDDEEEDDDT FVIGEGSDDE LDDDDDIEEE EVEYEEDDDE AVIEVLEELQ
VIREDLNRQP QRWYSDEE
|
|---|
| |