Gene PICST_32780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_32780 
Symbol 
ID4839781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp623052 
End bp624320 
Gene Length1269 bp 
Protein Length422 aa 
Translation table12 
GC content45% 
IMG OID640391096 
Productpredicted protein 
Protein accessionXP_001385817 
Protein GI150866276 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCTA ATGCAAGTTT CGCCGATGGG GGCCTTTTAG TTTCCCTCTA CAAGCAGCAA 
TATGTTGCCT ACTCTAACTT AACCAATGGC TCATCGGAGA CTTCATTCAA CATTTTATTG
GCAAGCATAG TAGTTTCGGT TTTAGCTTTG ATAGTGAGAA ACCAAAAGAA CAGCAAGAAT
AAGAATCTGG CTGCTTTGAA ACCTAAAAAG GCCAACATTA TTAACAGGGT GTGGGGCAAA
TGGACTCCAG ACTACGACTT CAAGACTCCA ACACCAGAGC CTTTCAAGTA CTGGGATTTC
AAGAAGACCA AGCCCATGCC ATATCGCGCG TTCAAGCACA AGTATACTGT TACCATGGGT
ATCAGAAACA TGGAGTGGGA CAGCTGGATT GAATTGGACA ACCAATGGTT GCGCTACCAC
AACAACAAAT TGGACCGGTT TAAGGAAAGA GGTGATGAGT TGTATGCCAC TTCTCCCTTG
GCTACTGCTG CAGCCTACGA GTTGTTGGAC GAGTTCAAGA GATATTTGCC AGCTAGATAC
CCTGCATTAT TCAAGGCTAC AGACATTGGG ATGGATAATT TGGAAACGGG CGAATCGTAT
GATTTCCGTC CTGGACACCA TGACGATCCT ATGAAGCTAG CTGCTATGTT CACGCAGGAC
GACTTGGCCA TTATGATTGA ACATGAAGAT GGTAACTACT CGTTGGAAGC AGGAGCAATT
GCGTTGGCTG GGTTCTGGAG ATTGAGAGAT AAGTTCCAGA TGAAACTTAA CGAGATCCAT
ACTAGCGGTG ATGTGCCTAA GTACGAAACC AATTTGAAGA TGGGGATGAC AAAGTTCTTT
CGTCGTTTGA CGGTAGATAA ACCTGTTGTG AGAAACAATT ACTTTATTCA AACCGATGAC
AACTTGGGCT GGTCCGACTC CATTGGTCGT GAAGATGTAG AAGAGATTGG AGGCTGGTAC
ACGGCCAAGG TGGCATCTGA AATAGACAAG TTGTATTTTA GAAGCGAGAG ACAGAGCTTG
CGCCGTTTGC CCATCAGTGG AGGAGTTGTG TTTACTATCA GGACCTACTT CATTCCTATT
ACAGAATTAT GCGACGAACC CCATATTCCC CGTCGTTTGT TGAATGGTAT CAACAGTTGG
TCAGACGATG TAGAGGAGTA CAGAGGATAT CATAAGTATA AGGACATTTT ATTGCCCTAC
TTGGAGAAGA GGGCAGAGGA GCAGGAGAAG GAAGGCTTGG GCAGTGAACC CGAAGTGTAT
CCATTCTAG
 
Protein sequence
MEANASFADG GLLVSLYKQQ YVAYSNLTNG SSETSFNILL ASIVVSVLAL IVRNQKNSKN 
KNSAALKPKK ANIINRVWGK WTPDYDFKTP TPEPFKYWDF KKTKPMPYRA FKHKYTVTMG
IRNMEWDSWI ELDNQWLRYH NNKLDRFKER GDELYATSPL ATAAAYELLD EFKRYLPARY
PALFKATDIG MDNLETGESY DFRPGHHDDP MKLAAMFTQD DLAIMIEHED GNYSLEAGAI
ALAGFWRLRD KFQMKLNEIH TSGDVPKYET NLKMGMTKFF RRLTVDKPVV RNNYFIQTDD
NLGWSDSIGR EDVEEIGGWY TAKVASEIDK LYFRSERQSL RRLPISGGVV FTIRTYFIPI
TELCDEPHIP RRLLNGINSW SDDVEEYRGY HKYKDILLPY LEKRAEEQEK EGLGSEPEVY
PF