| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32693 |
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| Symbol | PSD1 |
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| ID | 4840310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 414989 |
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| End bp | 416743 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 12 |
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| GC content | 46% |
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| IMG OID | 640391625 |
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| Product | phosphatidylserine decarboxylase |
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| Protein accession | XP_001385764 |
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| Protein GI | 150866236 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0688] Phosphatidylserine decarboxylase |
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| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0477743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0244579 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCA ACCACCCATT GCTGAGAGCC ACTACCATGG CCGAAATCGC ACTCAAGGCG
CAGCGGAATC AGCAACAGGA GCAACAGCAG AAGCGGAACT TCTCCCAGTT CACCTCCTAC
TACTACCAGT TCCCCAAGAT TCCTCGCCCC AAGAGGAACG TCTTGTACTA CTCGACCTGG
ACATCCAAGG GCTCTAAGTT CATGCCTACA AGAAAGAACA TCCACTTCCC CAACTTGAGA
ATCTCCCGTA GATCGCTTTC CAATGCCAAC CAGAAGTTGA AAGTCAAAAC TAAGAACTTT
CACAAGCGAT TCTTCTCTGT AGAGGCTCGT AAAAGGAGAC AACAGCGCCG TAGATTTATC
AGATGGTGGA CCATCACGTC GTTGGCCATC GTGTTGGGTG GTGTTGCTGC CAAAGTCAGC
TACGAACGCG GTGAGCAAAA CGACGAAGAA TCGGGTCCTC ACCAGTATCG TATCAAGCCA
CAGTCATGGC ACTTGTATGC CTATTCGACT TTACCCTTAA AGACCATTTC GCGTATCTGG
GGCCAGGTCA ACTCGATCAA CTTGCCTGTC TGGGTCAGGT CGCCATCTTA CAGACTCTAC
TCGGCCCTCT TCGGTGTCAA CTTGGACGAA ATGGACGAAC CGGATCTCAC TACATACAGT
AATCTCTCAG AATTCTTTTA CCGTAAGTTG AAACCAGGTA TCCGTCCCCT CGGTGATAGT
GACCTTGTTT CTCCATCTGA CGGAAAAGTG TTGAAGTTTG GTGTCATCGA AGACGGCGAA
ATCGAACAGG TCAAGGGCAT GACCTACTCA ATTGACGCTC TTTTAGGGTT GAAGACTCAA
AGATTGGCAG CACCAAGTCA CTCCTTGGAC TTCGACTACA ATCTGGACGA CTTTGCCGTT
ATGGAAAGGC ACGAAGAGTT TGCCAAAATC AACGGAATCT CGTATTCTGT AGACGATATA
ATTGGTGGCG AAGGCTCAGA AACTTACCAC ATTAACAAAT TAGATTACAA GGATGTTCAT
GATGGTACAG CCAAGGGTTC AAGAGCCACA TTCTCTAAGG AAATGGCCGT GGCCAAGAAC
TTGGCCCCCA CTCCGTTAGA CGCTATCAAA ACTAGCCCAA ACAAGCAATT GTATTTCACA
GTTATCTATT TGGCTCCCGG CGATTATCAT AGATACCACT CTCCTACTAA CTGGGTGACT
ACTTTGAGAA GACACTTTAT TGGTGAATTA TTCTCTGTAG CTCCCTTCTT CCAAAAGACC
TTACAGGGCC TCTTTGTGTT GAACGAAAGA GTTGCCTTGC TCGGCTACTG GAAGTATGGC
TTTTTCTCGA TGATTCCTGT AGGTGCTACC AACGTCGGTA GTATTGTAGT AAACTTCGAT
AAGGACTTGA AGACCAATGA AAGGTACGAA CACGAAGTAT ATCTGAGAAA TTCTACCCCT
GATGAGAACA CTCCTTTGCT TGAGGGAGTC AGCGATTCTG AATCTTCCAC AGACTTGACT
ACACTCTCCA CTACTAGTTC AGAGCCAGAT AAGAAGGAAA AGAAGAAATT GAAGAAGAAT
ACAGTTTACG AAGCTACGTA CACCAAGGCC AGTAGATTAC TAGGCGGTGT TCCATTGTCC
AAGGGACAAG AGGTTGGTGG ATTCAAGTTG GGTTCTACAG TGGTGTTGGT CTTTGAAGCC
CCCGAAAACT TCAAGTTCAA CTTACAGATC GGTCAAAAGG TCAAAATGGG GCAGTCATTG
GGAGATTTTG TGTGA
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| Protein sequence | MNINHPLSRA TTMAEIALKA QRNQQQEQQQ KRNFSQFTSY YYQFPKIPRP KRNVLYYSTW
TSKGSKFMPT RKNIHFPNLR ISRRSLSNAN QKLKVKTKNF HKRFFSVEAR KRRQQRRRFI
RWWTITSLAI VLGGVAAKVS YERGEQNDEE SGPHQYRIKP QSWHLYAYST LPLKTISRIW
GQVNSINLPV WVRSPSYRLY SALFGVNLDE MDEPDLTTYS NLSEFFYRKL KPGIRPLGDS
DLVSPSDGKV LKFGVIEDGE IEQVKGMTYS IDALLGLKTQ RLAAPSHSLD FDYNSDDFAV
MERHEEFAKI NGISYSVDDI IGGEGSETYH INKLDYKDVH DGTAKGSRAT FSKEMAVAKN
LAPTPLDAIK TSPNKQLYFT VIYLAPGDYH RYHSPTNWVT TLRRHFIGEL FSVAPFFQKT
LQGLFVLNER VALLGYWKYG FFSMIPVGAT NVGSIVVNFD KDLKTNERYE HEVYSRNSTP
DENTPLLEGV SDSESSTDLT TLSTTSSEPD KKEKKKLKKN TVYEATYTKA SRLLGGVPLS
KGQEVGGFKL GSTVVLVFEA PENFKFNLQI GQKVKMGQSL GDFV
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