Gene PICST_32690 details

Gene Information

• Locus tag: PICST_32690
• Symbol: SNF7
• ID: 4839988
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Scheffersomyces stipitis CBS 6054
• Kingdom: Eukaryota
• Replicon accession: NC_009046
• Strand: +
• Start bp: 408113
• End bp: 408781
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 12
• GC content: 49%
• IMG OID: 640391303
• Product: Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated protein VPS32)
• Protein accession: XP_001385432
• Protein GI: 150865987

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00479925
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.0750139
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTGGAACT ACTTTTTCGG TGGCAACAGC CTGACTAAGA AGGAACTTCC CAAGAAGGCC 
ATTGTTGAGT TGCGAGAACA CATCAACACC TTGAATAAGA AACGTTCCCA TTTGGAACAG 
CAGATGGCTG ATCAGGAGGC CATTGCCCGT AAGAACCTCA GCACCAACAA GGCAGCCGCC 
AAGAATGCAT TGAAGAAAAA GAAGGGCTAC GAAGTCGCCT TGATCAAGAC CGAGAACCAG 
ATTGAATCCT TGGAAACCCA GTTGGGAGCC ATCGAAGGTG CCAACTTGAA CTTGGAAACC 
ATGAAGGCAA TGAAACAAGG TGCCAGTGCC ATGAAACAGA TACATGGCGA ATACAACGTC 
GAAAAGGTGG AAGACACCAT GGACGACATC AGAGAACAGG TTGAGTTGGC CGATGAGATA 
TCAGAAGCCA TATCCAGACC AGTTGGTACT GAGTTCGTAG ACGAAGACGA ATTGGAGGAA 
GAATTGGCAG CATTACAAGC AGAAGAGCAA CAGCAACAAG TCCCAGCACA GAAGGCTGCT 
CCTGAAAAGC AACCGGCCCA ACAGTTGCCT AGCTTCCCTA CGGTGAACAA AGCTCAGCCA 
GAAGCTACTG TGGAAGAAGA CGAAGACGAA GAAGCCTTGA AGGCATTGCA AGCCGAGATG 
GGCTTGTAA 

 

Protein sequence

MWNYFFGGNS STKKELPKKA IVELREHINT LNKKRSHLEQ QMADQEAIAR KNLSTNKAAA 
KNALKKKKGY EVALIKTENQ IESLETQLGA IEGANLNLET MKAMKQGASA MKQIHGEYNV 
EKVEDTMDDI REQVELADEI SEAISRPVGT EFVDEDELEE ELAALQAEEQ QQQVPAQKAA 
PEKQPAQQLP SFPTVNKAQP EATVEEDEDE EALKALQAEM GL