| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32673 |
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| Symbol | TIP39 |
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| ID | 4840302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 370409 |
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| End bp | 372649 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 12 |
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| GC content | 37% |
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| IMG OID | 640391617 |
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| Product | Tuftelin-interacting protein TIP39, contains G-patch domain |
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| Protein accession | XP_001385756 |
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| Protein GI | 150866231 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.541012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0285832 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTTC TGGGACTCGC ATTTACCAAA GCAAGTAATA ATAATTCCAA TAATGATACG
ACTAATAATA ATGTGGGTAG TAAACCCTTC AGTATGATGG CAGCAGCAGT TAGAGATGGA
TATTCAGATT ATGAAGAGGA GATGGAGGAA GATGTAGTTG TACATAACAA TGAGAGAGAC
CTGAAGTCAA AGTTTGCGTC ACCTACAGAA TCATTTAACA AGAATGCCGC TTGGCTCAAC
CCACCGACGG CAGTGAATTC CAATTTTCAG AAGTATGGAA TAGGTGCACA ACTCTTGGTT
AAAATGGGAT ATCAAGTAGG CAAGGGTCTC GGAGCTAATG AAGAAGGTAT TGTTAATCCA
ATAGAGACTA TGTTGCGGCC AAAGGGATTG GGTGTAGGTG GTATACGAGA AAGAAAGGAT
TCAAATCGAA AGAAGGGGAA CGATGATGTC GATATGGATA TCGAAAGCAG TGACGATGAA
CTGACATCAT TACAAAAGAG AGAATCGATT AACTTATACA GTATTGTAGA AGAGTTGGAA
TTGAAAAATA TGACTGTTCC CAAAAAGTAC ATCGAATTGT CTGATCAGTA CTCTCAAAAT
CAGTACTCAG AGGATCTATA CGATCAAGTT AAAGAGGCAT ACAATCAACT CAGCAGAATA
TCAGAAGAAC TCAATTCGCT TGATCAACAA GAAAAGTTCA TAACATATCA GTTAAAGGAT
ATAAATCTCA AGTCAAATAC CCTTGAATCA GAACTTTCTT CCACTGTCGT CACGTTAGAG
AAAATTGAAG AAACATTACC GATTCTACAG AACACGAAAG ATTCCATCGC AATAATTAAA
GAAGTGGATA TACTACTTCG TTCAATATTG GAAACACCAC TGAAATCATA TCCCAACATT
AGTTCATTGT GTGGGAGCAT AGTTGCTGTG GCTATACCAT TACTCTTCAA TGATGGAAAC
ATTGATGAGA AAAGTTCGAG CTTCAATACA TTAGCCGAAT GGTCGATCAT CTATAGAGAA
GTAGAAAAAA GTGCACTGTC AGAATTGTCG TTTTTTGATT CCTTGATCTA TCCCCAAATT
GCAAATCAAA TATCGAAGAC TATTTCCCTG ACGATACCTG CAGAAGAAAG GAGTATTCAA
ATATTGAACT ATTTGCAATT CTGGCTTGAG TCACCGATTA TCATAAACCC ACAATTTTGC
ATTCAAGAAA AGCTCATGCT GGAACTAGTA ATTCCCTTCA TATCTGAATC AATAGATCAA
TGGAACCCGC TTGATCCTAA AGATTCGTCT CCGACCTTTC TTATTGATTA TCTTGCCGGA
GTAGTTGACG GTGATATTTC TTTATTTGAA GAGATTTTAC AAAATGTAAA TCAAAAATAT
TTGGACTTCA TAAACTATAA CAATCCCAAA TCTATTTGGC AAAACATTTG CAAAGCAACT
CTGATTGAAG AAATTGCTTG GATAGAAGAA ATCAACAAAT TTACCAAAGT ATGGATTCCT
CTTTTCAAGG AATACCCACA ATTAGATTTT GCTGCATCCA ATGGAACAGA ACTTTTGGAA
GCCTTGACAT GTGGACTACA GTTTCCTTTT AACATTCGCT CGGATCTTCG AGTAAAATTA
TTATTAGCAT TTGAATTGCT TTCTTTGATA GAAGAAAATG ATTCTGTCAT ATTACTTCAG
TTCACCTGGG GCAACAATTG GATTGAATCA CTCTTAAGTA TGATTGAGGA AAATCCATCG
AGAGTCGCAG AAAGTTACAG AGAGTGGTTT AAGTATTTTC AAGAAACAAA GAACTCGTAT
CTGGAAAGAA TACTTGATGT GATTAAATGG TACCTAGATC TTGTATTGAA TATTATTGAG
AATGGGAGGG ACGTTGCAAA TAAACTTCCA AATATTAATG GAAATGCACA CCCAGAAAAG
TCTGAAGTTT TGAAGTTGAT CCAAAATAGC ACTTCGAACG AAAAGGAAGA GCATCGCTCT
GTTCATGGTA TTCCCGCTTA CCGACTAATG ACATCATTCA AAGATGTCGT GGCAGATTAC
TGCTTACAGA AGGGATTACT TTTTGGCTCC GAAAAGAACA GAGTACATCC GACATTAGGG
TATCCACTAT ACACTATAAA GAGTTCGAGA GGTACAAAGC TCTTCTGCTA TGCCGATCAG
GATGTGCTTT GGATTGCACA AAGTGGCGAA GCTATGGAAT ATGATCCTAT TTCGCTTGAC
GACTTACTAC TGTATTTATA G
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| Protein sequence | MSFSGLAFTK ASNNNSNNDT TNNNVGSKPF SMMAAAVRDG YSDYEEEMEE DVVVHNNERD
SKSKFASPTE SFNKNAAWLN PPTAVNSNFQ KYGIGAQLLV KMGYQVGKGL GANEEGIVNP
IETMLRPKGL GVGGIRERKD SNRKKGNDDV DMDIESSDDE STSLQKRESI NLYSIVEELE
LKNMTVPKKY IELSDQYSQN QYSEDLYDQV KEAYNQLSRI SEELNSLDQQ EKFITYQLKD
INLKSNTLES ELSSTVVTLE KIEETLPILQ NTKDSIAIIK EVDILLRSIL ETPSKSYPNI
SSLCGSIVAV AIPLLFNDGN IDEKSSSFNT LAEWSIIYRE VEKSASSELS FFDSLIYPQI
ANQISKTISS TIPAEERSIQ ILNYLQFWLE SPIIINPQFC IQEKLMSELV IPFISESIDQ
WNPLDPKDSS PTFLIDYLAG VVDGDISLFE EILQNVNQKY LDFINYNNPK SIWQNICKAT
SIEEIAWIEE INKFTKVWIP LFKEYPQLDF AASNGTELLE ALTCGLQFPF NIRSDLRVKL
LLAFELLSLI EENDSVILLQ FTWGNNWIES LLSMIEENPS RVAESYREWF KYFQETKNSY
SERILDVIKW YLDLVLNIIE NGRDVANKLP NINGNAHPEK SEVLKLIQNS TSNEKEEHRS
VHGIPAYRLM TSFKDVVADY CLQKGLLFGS EKNRVHPTLG YPLYTIKSSR GTKLFCYADQ
DVLWIAQSGE AMEYDPISLD DLLSYL
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