Gene PICST_32596 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_32596 
Symbol 
ID4840134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp194855 
End bp195985 
Gene Length1131 bp 
Protein Length376 aa 
Translation table12 
GC content44% 
IMG OID640391449 
Productpredicted protein 
Protein accessionXP_001385370 
Protein GI150865948 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.26747 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTTC TATCTATACT ATGCTCGCTT CTAACTACAG TCGTACCGTT TGTGTTAACC 
ATTAAATGCT TTGATCCGGT GATTGCCAGC CAGATTCCAT ACACATCCTA CCAGTTTCTA
CTCAACTATT GGATCTATTT TGTTATACTT CAGTTCGTCA ACATCAACTT TGTAACCACC
CATGGGCAAT TCTACTTTGA CATCATTTCA CAGACGCTCA AGCTCTGGTT TTTGTACGGT
AGTCTGAACA ATTTGGCTCT ATTCAACCGG TTTATTGTCA CCAGAGTCAC TTCTTCCAGA
GACTTCAATG GCCTCTACCA TCTTGAAGCC AACTACATTA ACCCATTGTT GAGTAAATAC
GTAACTTCCC AGATCCGTAC TGATTCTAGA GGCAAGAGAA TGGGGCAACT ACAATACTAT
CTTATCAGAT TGGGCCAGAA ATATGCCAAT GACACCAATG TCGACGATAT GCTGTTTATT
CTTTTAGAAC GTATACTATC TCTGGCCCGA ATGCTAGTGG TTTCGCTATT TGCTCCCCAG
ATTCTGCCAA ATATCAAGAC TTCTCCTAGA AGAAATGAAA TGGTCCAGCA CTATCAACGT
CATAGGTCAT CGAGTGGAGG GTCCAAGAGC CTTGGTACCA GCACCAGAAC AGCGCCACTG
GTGTACAATG TCGGGTCATC TCCACGTAGC ATTTCTGGCG GAGGTCTGTA CCATGAAGCT
ACAGTACTAG AGCTCAATAG GCATGGTGAT GCTATTGGAC AAAACTATAC AAATGCTCAA
TCTATGCCGT ACCCAGTGGG GACGGGATCC AATTCGATTC TCAATGATAA TCTTGCAAAT
GTTCCATTGA GCAAGTTCAT GAACAAACCT CGTAGTGTAT CTGAACGAAT CGATGCAGCG
GCTTCCAAGT ATTTTGGCAT CAAGCCTAGG TCCAGTTCTG CGGGAGAATC GGATACAGTA
CAAAGAGGTT TTGGTCCACT GGCTGGTTTT AGAGTGAATC CCAATTCAAT CAATTCCATC
AGGCTGCTGT ACCAAATGGA ACAGCAGAGA GAGAACGACA TACCCCCATT AGTTACGGTG
TCCTCACCTT CTTCGGGTAG AACAACTCCT GCAAGACAGC TACTAAACTA A
 
Protein sequence
MIFLSILCSL LTTVVPFVLT IKCFDPVIAS QIPYTSYQFL LNYWIYFVIL QFVNINFVTT 
HGQFYFDIIS QTLKLWFLYG SSNNLALFNR FIVTRVTSSR DFNGLYHLEA NYINPLLSKY
VTSQIRTDSR GKRMGQLQYY LIRLGQKYAN DTNVDDMSFI LLERILSSAR MLVVSLFAPQ
ISPNIKTSPR RNEMVQHYQR HRSSSGGSKS LGTSTRTAPS VYNVGSSPRS ISGGGSYHEA
TVLELNRHGD AIGQNYTNAQ SMPYPVGTGS NSILNDNLAN VPLSKFMNKP RSVSERIDAA
ASKYFGIKPR SSSAGESDTV QRGFGPSAGF RVNPNSINSI RSSYQMEQQR ENDIPPLVTV
SSPSSGRTTP ARQLLN