| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90001 |
|---|
| Symbol | UBP15 |
|---|
| ID | 4839495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 1295246 |
|---|
| End bp | 1299752 |
|---|
| Gene Length | 4507 bp |
|---|
| Protein Length | 1322 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640390810 |
|---|
| Product | Ubiquitin carboxyl-terminal hydrolase |
|---|
| Protein accession | XP_001384939 |
|---|
| Protein GI | 150865633 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5077] Ubiquitin carboxyl-terminal hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TCAAGCAGAC ATCAAACGCA TTGGACTTTC TGGACTTGAT TCTGTACACG TGATACGTCT
TCGAGTAACC AGCTGTTTAA TTTTGCGGCC ATCTGTGACA GAATCAACAT TTGAATCAGT
CTGATCGGAT CGCGCCCCCC ACGCATTTCA ACTAGTGAGA TTGAGCGTAT AGATAGTAGC
AAACATAGCT GCTAGTTGAT CAATTGGCAT ACGCCTCTCT ACATTATTGA GGCAGATAGC
ATTGGTATCA ATATCAAACT TGGTAATCAC AATTGATAGC AAGATTCAAT TGTAATTATT
GCTACTGGCA TTCTTAGATT TTAATTTTGT TGATCCTGAA TCTTGACGCT ATATTTGGAC
CTTTCCCATT TATCACACCA TCATCCATAG TTTCGACCAA ACGCTGCCAT GGATGCCAAT
GCCGGTAACG GTGTTACACC CCAGAAGCGG GCCGCCAATA ATGATATCAT CGACTTGGAT
AGTGACTACG AGGCTATTGA CGATGGACAG GCCAACGGAC GTAGGAAGGA AAACGACATT
GTCGAAATTT CCAACGATGA GGATGATGAT TTAGATGGCG ACATCGACTA CGACGTAGAT
GAGGACGATG ATGAAAACGA CCACATCGAC AGTATCGCAC ACAAAGATAG TGCTGCGAAG
AAGAGCATCA ATGGCATTCC ACCTGCTGAC GATTTTGCAG CCAATGCTGC TCGCTTAATG
AAGCCTATTG TCGATTATCC GGTCAAAGAC GAAGCTCATT ACGTGTGGGA GATCAAGGAC
TGGCACGGGT TAAAGGAAGA GAAGGTGAGG TCTCCTCGAT TCAAATGTGG AGACTTTGAG
TGGAACATCT TGTTGTTTCC CAGAGGCAAC GGCAGAGACA ACGCCATATC CATTTATATG
GAACCACACC CTATTCCTGA CGAAAATGGT GCTATCAGTG ATGACTGGTA TGTATGTGCC
CAGTTTGGAC TCGACATCTG GAACCCAGTC TATCCTCATA GTCACATTCC CAGTGGTTCT
AGTCATAGAT TCAACAAGAA CGAGACAGAT TGGGGTTTTT CGTCATTGAT AGACGGGAAA
CAGTTGACTT CAGCAAACAA TAGCAGAATC GGCAACCAGC CCCATGCCAT TTTGGAAAAC
AACCAATTGA ATATCACCGG ATACGTGAAA ATCATTGATG ATTCGTCAAC GGGAGTGTTG
TGGCACTCTT TTATAGATTA CGACTCGAAG AAATCGTCAG GTTTTGTAGG TTTGAACAAC
CAGGGAGCTA CGTGCTATTT GAATTCGTTG TTGCAGAGTT ACTTCACAAC TCTCAACTTC
AGGAAACTCG TGTACCAGAT CCCCACAAAT ACCGCCTCGA ACTCCAAGCA GTCCGTGGCA
CTATCATTGC AGAGGATTTT CTATTTGCTA CTGTCTTCAA AGGAGCCCGT AGGTACCTTG
GAATTGACTA AGTCGTTTGG ATGGGACTCT TCTGATGCTT TTACCCAGCA TGATGTTCAG
GAGTTGAATC GTATTTTGAT GGACAAGTTA GAGACAGCCA TGAAGGGTTC CAAGATTGAA
AACTCGTTGA ATGACATCTT TGTCGGCAAG ATGAAATCGT ATATTAAATG TGTCCATGTT
CCATACGAGT CCTCAAGAGT CGAGGACTTT TGGGATATCC AGTTGAATGT CAAGGGATTT
GCCAACTTAC AACAATCATT CAAGAACTAT ATTGAAATTG AAATGCTAGA GGGCGAGAAC
AAGTATCAAG CAGGCGATGA ATATGGTTAT CAGGATGCAA AGAAGGGAGT CGTTTTCGAA
TCCTTCCCTC CAGTTTTGCA TTTGCAATTG AAAAGATTCG AATATGATTT CATGGTGGAT
GACTTGGTGA AGATTGACGA TTTTTATGAA TTTCCGGACA AGATAGACTT AAAACCTTAC
TTGGATGAAG ACTTACCTGA AGAGGTCAGA AACCAGAACT GGAACTATAA ATTGCATGGT
GTTTTAGTGC ATCAAGGAAG TATTTCCAAT GGTCATTATT ATGCTATGAT CAAGCCTCAT
GCAAAGGGAG AGACTTGGTT ACGATTCGAC GACGACAAGG TATGGAAAGT TACACATAGC
CAAGTATTCA AGGAGAACTT TGGTGCGAAT GAAGTCACTT CAGAAGAGTT TTCAAAAATG
TCTCGTCTTG AGCAACAGGA AAATTTGGTA AGAAGAGTAA CTTCGGCTTA TATGTTGGTT
TATTACCGTG AATCGGAGTT GGATAGTGTA CTTCCGAGCG ACGAAGAAAA CCTCAACGCT
GTAATTCCTG AACATATTCC ACGCCAAATC AAGCATGAAT CCGAAGAACG TGAAAGGTTG
GAGAGATTGA AGCAAGAAGC TCTATATTAT ACCAACGTTA AATTCATAAC CACATCCACC
ATTAACGAGT ACACAGGTTT CGATCTAGCA TTGGATCCAA GAGTTCCAAA ATTCTATGAC
GAGAACCTCC TTGGAACTCC AGCAGAACCA TTGGTCTTCA AGGTGAAGAA GGATGACCGT
TTCCTATCAT TAAATCAGTT GGTTGGGAAG CACTTGAAGT ACTTTGAGGA GGATGACGAT
GATGAAGTTC TTGACGATAA GCAGTTGTTC TTCAGATTGA TAGCGACATG CCACAGAAAG
AATAATACTA ATAGGACTGA CACCGAAGTT GCCGATGAAC TCAAGGATGC CACGATCAAT
TCCGTTTATT TTAAGGCTTT CAACAGAAAA CATGATGAAA TGGTCTTTTA CGTAGAAGAG
TTGAATAAAG ATATAAGGAA TATTGTGCAA TCGGTACCAT CTACTGGTCC TATTGATCCA
TCTGAGTTCC AATTTAGTAC TGTGTTCAAT AAGTTGAAAG AAGTGGGAAC GAAGCAGCTC
GACTCTTTCA AATTCCATAA CATATTCGAC TACTCGAACC ATATTTTGAT TTTCGTGAAA
TATTTTGATC CTATTTCTCA GGAGCTTAGA GGATTGAGTC ACATCGTTGT TTCTAAGGTT
GAGCCAATTA GTTCGATAAT CAAGCCTATA AACGAATTAT TGGATTTTGA TCCCAATTAT
CAATTAGACA TGTTTGAAGA GTTATCACCA AGCAAGATTG ATAAACTTGA TAGAAGTTTG
ACATTTGAGA AGCAGGAGTT GAGCAACGGT GATATTATTA CAGTTCAGCC TCATAACTCA
AGCGAACTTG CTAGTGGCAA GAAATTTGAA GATGTTAGAG ATTACTATAA ATTTATTCTC
ACAAGGATGC ACATTGTTGT TAAACCATTC AAGGCCGACA TCGATGAAGA AGATAGTGAC
TTCGTAGCCG ACGAAAACGA AGAGTTAAAA ATTTCAGGAG AAGCAGAGGA CATCACCAAA
AATTCTGATG ACGAAATCAC GACAAAGGAA ATAGAGGCTG CTAAGCAAAT TAGCAAATCT
TTCGAATTGT GGATTTCTAC AAGTTATTCT TACCAGGACC TTGCTGAGGA AATTGCTAGA
AAATTAGAAG CAGATGTCGA CCCGCAGTAT TTAAGGATTT TTGTTCTTAA CAATCAAATG
CAGAGATACC CATTAAAGTC AATCCATCAG TTATCCCTGT TCTTTCCGAA GACAGTTCCT
ATTAACCAAG TTGTTACATT TGAATATGAA ATTTTAAATA TTAAGTTGAA GGACTACGAG
AACTTGAAAT CAGTTAAAAT TCATTGGTTG AGCAGCCTTT TGCAATATCA GGTCTTTGAA
TTGTTAGTAC CTAGAAACGG CTTAGTCTTG GACTTGATCA ATAAGTTATT GCACAAGGTA
AATGTTCCTA AGAAAGATTT AAAGCACATA TTGCTTTGGG CTGGAAGTAA CCACAGCTAT
CAGGCATTGA TCAGATTTGA CAATCCAATT GAGCAACTAC AGGATGGAAT TGACTTGTAT
GCTGGTATTT TCCCTGCAGA AGTCGAGATC TTGACTAACC ACGATATGTT TAAACGATTC
GTGAACGATC CTGTTGACTT GAACGAGTTT GATAACGAGT TCCTTAAGGA AGAGTATCAA
CTTTCCAAGG AGTTAAGCAA AGATATGAAC ATGATTCCTG CGTTCCACTT CTACAAGAGC
ATTGGTTATC ATCATGGTAT TCCGTTCATC TTAGCTATCT ATCCAAAAGA GAAATTCTCC
CAGACAAAGG AGAGATTAAG GAGGAAATTG GGTTTAGGAA TCCAAGCTTT TGAAAAGATA
AGATTTTCTT TGTCTGATAG CCACGACAAA GGAGCTTATA TTGACAACGA GGATGATGAC
TTTATTTTAT TTGACGAGAT TGGAAAGGCA CACACTTCTA TCTCATTTGG ATTGGACCAC
CCCGATCGGT CACCACGTCG TCAAGGTCAA TCCGACAAAG GGATTTCAAT TAACTGAGAA
ATCCACAATT GCACACAAGG CTATTCATGG CGTTCAGCGT CGTTGTTCTA CATTTGCTAT
ATAGCTAGAG CTTTATCATT CTTTCATTGT TTGTCTTTTT CAATAGCAAT ATATGTTATA
GTACATG
|
|---|
| Protein sequence | MDANAGNGVT PQKRAANNDI IDLDSDYEAI DDGQANGRRK ENDIVEISND EDDDLDGDID
YDVDEDDDEN DHIDSIAHKD SAAKKSINGI PPADDFAANA ARLMKPIVDY PVKDEAHYVW
EIKDWHGLKE EKVRSPRFKC GDFEWNILLF PRGNGRDNAI SIYMEPHPIP DENGAISDDW
YVCAQFGLDI WNPVYPHSHI PSGSSHRFNK NETDWGFSSL IDGKQLTSAN NSRIGNQPHA
ILENNQLNIT GYVKIIDDSS TGVLWHSFID YDSKKSSGFV GLNNQGATCY LNSLLQSYFT
TLNFRKLVYQ IPTNTASNSK QSVALSLQRI FYLLSSSKEP VGTLELTKSF GWDSSDAFTQ
HDVQELNRIL MDKLETAMKG SKIENSLNDI FVGKMKSYIK CVHVPYESSR VEDFWDIQLN
VKGFANLQQS FKNYIEIEML EGENKYQAGD EYGYQDAKKG VVFESFPPVL HLQLKRFEYD
FMVDDLVKID DFYEFPDKID LKPYLDEDLP EEVRNQNWNY KLHGVLVHQG SISNGHYYAM
IKPHAKGETW LRFDDDKVWK VTHSQVFKEN FGANEVTSEE FSKMSRLEQQ ENLVRRVTSA
YMLVYYRESE LDSVLPSDEE NLNAVIPEHI PRQIKHESEE RERLERLKQE ALYYTNVKFI
TTSTINEYTG FDLALDPRVP KFYDENLLGT PAEPLVFKVK KDDRFLSLNQ LVGKHLKYFE
EDDDDEVLDD KQLFFRLIAT CHRKNNTNRT DTEVADELKD ATINSVYFKA FNRKHDEMVF
YVEELNKDIR NIVQSVPSTG PIDPSEFQFS TVFNKLKEVG TKQLDSFKFH NIFDYSNHIL
IFVKYFDPIS QELRGLSHIV VSKVEPISSI IKPINELLDF DPNYQLDMFE ELSPSKIDKL
DRSLTFEKQE LSNGDIITVQ PHNSSELASG KKFEDVRDYY KFILTRMHIV VKPFKADIDE
EDSDFVADEN EELKISGEAE DITKNSDDEI TTKEIEAAKQ ISKSFELWIS TSYSYQDLAE
EIARKLEADV DPQYLRIFVL NNQMQRYPLK SIHQLSSFFP KTVPINQVVT FEYEILNIKL
KDYENLKSVK IHWLSSLLQY QVFELLVPRN GLVLDLINKL LHKVNVPKKD LKHILLWAGS
NHSYQALIRF DNPIEQLQDG IDLYAGIFPA EVEILTNHDM FKRFVNDPVD LNEFDNEFLK
EEYQLSKELS KDMNMIPAFH FYKSIGYHHG IPFILAIYPK EKFSQTKERL RRKLGLGIQA
FEKIRFSLSD SHDKGAYIDN EDDDFILFDE IGKAHTSISF GLDHPDRSPR RQGQSDKGIS
IN
|
|---|
| |