| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_89585 |
|---|
| Symbol | |
|---|
| ID | 4839639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | - |
|---|
| Start bp | 375506 |
|---|
| End bp | 379058 |
|---|
| Gene Length | 3553 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640390954 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001385086 |
|---|
| Protein GI | 150865749 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.194412 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CCACTGTCTC CACTTATCTC GTCACTACGG GACAGCAGCT GAACCACCGC TGTTCCGCTC
GATTCTCTGC TCTCTAGAAC ACCATACTAC ACCATCTACA GCATTGTATA CGCTCCGGCT
GTCTCGGTGT ATGTTTCCGT ATATCTTCAG ATCTACATTT TTCTCTGGCT AATTCTCATT
CTCGCTATTT CTTTTCCAGT TCCCAGAAAG AGAAAGCTCG CCGTTTGGCA CGGTCCGACT
TTTCTTTTGT CGTTCCAGAA TTCGGCACTA ATTTGTGTAT CACAGATCGA TGCCAATTTC
CTCCTTGGAT TATTATATAT GCTTTATCGA CCCCATGTCT AGCACCCACC ACTTTTCTTT
ATTCCTTACT GTAGCTTGAG CTGTATGTCG TGTTAGAAGT GTCGCTGTTT CGTTGATATT
TGTGAATTAG CGTCGACTTC CTATCCGACC GTCCCACACG TTGTCCCTGT CTGAAATTTC
TAGAGCTGAG AATAACGAAG CCATATTCAC GTAATACGTC CGAACACCAT ACCACCACCA
CGACAGATAC AAAGATACAA CCTGCTATAT ATAAGTGTCG TGCCCTAACT ATCCATATCT
ACGGCCGCCA TCAGTATCAT TTCTCGATAT AATTCTCGTT GCTCAGTCCA TCGCCGTTTC
ATTAATCATC ACGACTAGTT GTAACAAATT TCATCATCCA AGCTGTCATT GACAATTCTT
ACACAACAAC AATGCCTTTG ACCGAGAAGC CTCATAACAG CATCAAGAAG ATCTTCAAGC
GGGATACCAC CCCCGTTTCG GACTCGTCGC TGCCCTCTTC GGCCAATAAC TCGCACATAG
GACTTCTGAA ACTCTTCCAC CACCACAACG ACAAAACACC TGCTGCCGTA GCCAGAGACT
CCAATTATGT TCTCAGTAAC GGAGTCAACA CCAATAACAA TAGCACTAGC AAAAAGTCCG
GAAACTCTCC TGTTGCAGCG GGAGCTCCTG CTGTACCCAG GAACTCTTCC TCCCTTTCAC
TCAAGAGAAG AAACACCAAC CCAGCACGTC TTGGTAACTC TTCGTCTTCC ACCTCTCCGC
TGGTGCCGAG CGACGATAAG ACTGCGGTAA CCCACGGACC AAAAGAATCA AAACGACTTA
CTCGTGCCGA AACTTTGGCT CACATAAATT CTGTGAATAA CAAAAATGCA AGAAACACCT
TCAACAAAGC CCATCTCCCC CAGAATTTCC AGCAGCCGAT ACTGGCTACA CCCTCAGCTC
ACGCTGGAGG AGATAAGATC GTATACAATC CCTACGGCCT CAACAAAAAT CCTACGCAAG
AAGCCCCTAA GAGCACCTCT TTCTACCTCA GTGGAGTCAG CGATGGTGAA CGAGTTTTGG
CTAACCCTGT AGCCGACCCC AACGAGTATT TACCCGCAGA CTTGAAGCAG GAGCATGTGA
ATTTGCTTGA CATGTTTGAA ATCGATGCCA ATACGAAGAA GTTGGGAGAC GGAGGCTCAT
CTGATGTGAG AATCATCAAT GCTATCAGCC ACAAGAAATC GGTCTATGCA TTGAAAAAGT
TTACTTTACT TTCAAAAGAG TCTGATCAAG ATTTCTATGA GAGAGTCACC AAGGAATTCA
TCATCTCCAA GAAGGCAGCT GTGTCGAGAC ATGTCGTGGA CGTTATAGCA CTTGTGAGAG
TCCAGTCACA GACGAACTTG ACCAGAGGTT GGGGGATTGT GTTGGAATTC TGTAACGGCG
GTGACATGTT CAGTGCCATC ATCAAACCGG GTTGGAAACG CACTCCTCTC CACGAGAAGT
ACTGTTTGTT TAAGCAAATA GCGTATGGCT TGAAGTTCTT GCACGACAAC GATATTGTCC
ATCGTGACAT GAAACCAGAA AACGTCCTTC TTGATGCCAA CGGAGTGGCC AAATTGTGCG
ATTTCGGGGT TAGTGACTGG GGCCACCAAG TTCATGGCGA TCTCACTTCT CCCATAAAGC
TTTCCACATC TTACGTTGGC TCGCCTCCTT ACTCTCCTCC TGAAGTCATG ATTCTTAAGG
AGAAATCTCA TGCTGAAATC AAGAATTTTG CGTACGATCC GTTCAAGATG GACTTCTGGG
GTTTGGGAAT GTTGCTTTTC TGTATCGTTT ACTCTGGAGT TCCATTTCAA TCTGCTACCG
TGAACGACCA TGCCTTCCGA GACTACAAGT TCACCCACAA CCGGTACTCT TCCGACCATC
CATCTTTCAA AAACTGCCAA GACTACAACA AAGGACCTGG CTCTGAGTTC AAATGGGCAG
CCCAGTTTCA GTCTACTGGT GCTTCCAGAG CTGCCTGGAA ACTCTGTGAT CCTTCCGTTA
CTCATAGATA CAACTTGGAG CAGTTGTTCA ACGATCCCTG GTTCTTGGGT TTGGAAATGT
GTCTCTACGA GCATCCAGAA CAAGACGTAA ATCCATTTAT CTTGCCTGGA ACAGGCGAAA
ACTACAATGG CTACATCTCA GCGAACTCTT CCGTACCTAA CTCTAGAGCC GCTTCTCGTA
GAGGAACATA TTCACGGGCC CAACACGATC CAGAAGATGA TTTACATACT CCGTTCAAGA
GCATGTTGGA TTTGGTAGGC CAGAGCTCGA AACCTCAGGG CCAATTACAA CCACAGACCG
GCGATGGTCC AGCAAAGATC AACACTAAGG TAGACACCAA GGTAGAACCC CAGTACAAGA
CTCCCATTAG TCCTTCCAGT ATGGTGGACG GGATTTCGTT GAACATGTCA CCTCTGAGAA
ATGGCCATAG TGGACGTCCT CATAGTAATT CTAATCCTGT AAGATACCCA TCCGACACCA
GTAGTTCTAA TGCCTCTATC CAGTCTTCGG ATAGCGGAAG ACCAAGATCC ATGTTGGAAA
TTGTGGCTGA CACTAGTAGA GATGCGAACA ATCTTCCTGC TGTCAAGGAG GTGGAAACTG
CTGAGGAAAA GAACGACGAT TTTTCTCCAG AAATATTTCC CTCTATTGAA CCAGTGCCGG
AAAAGAAAGA AGAAGATGAA CATGATGACG TTTTGAAGGA AGAGAATACG AAAGAAGAAC
ATGATAAGAT AGATGTCGCA AAAAATGAAG AGGATGCAAA CATAGACGAC GTAAAGAAGG
AAGAACAGAA AGAAGATAAA AAAGATGATG AAATTCGCTC TTTTGGCATA ACTCATCCAG
ATGGGTTATT AGACTCCGCT GATTCCTGTT TCAGTTTACT CCCTCAAGGC GATGCTGAGG
CCAAGAAAGC ACCGGGAGAT TTCCCGAAGC TTCTTCGTAA TTCGTCTCAG TTACGGTTGG
ATGTCAACGG AATGTGCGAG TTGGGCTACA AGATCAAGAA GCATCATCAC AACGAAATCA
GCACTGTTCA AATGTCCAAT TCCAATTCAA GAAGAAGATA ATGTTTTCCT TCACCCACCG
GGGATCTTGA TACAGGAAGC GAAGTGCTGT TTATGTCAAA AATTAGAAAG GACAAGTTAT
GAGTTGAGTT CTTATTTATT CAGGATACAT TCATACATTC ATTAGATAGT TTAGACTAAT
ACACGTGATA CAG
|
|---|
| Protein sequence | MPLTEKPHNS IKKIFKRDTT PVSDSSSPSS ANNSHIGLSK LFHHHNDKTP AAVARDSNYV
LSNGVNTNNN STSKKSGNSP VAAGAPAVPR NSSSLSLKRR NTNPARLGNS SSSTSPSVPS
DDKTAVTHGP KESKRLTRAE TLAHINSVNN KNARNTFNKA HLPQNFQQPI SATPSAHAGG
DKIVYNPYGL NKNPTQEAPK STSFYLSGVS DGERVLANPV ADPNEYLPAD LKQEHVNLLD
MFEIDANTKK LGDGGSSDVR IINAISHKKS VYALKKFTLL SKESDQDFYE RVTKEFIISK
KAAVSRHVVD VIALVRVQSQ TNLTRGWGIV LEFCNGGDMF SAIIKPGWKR TPLHEKYCLF
KQIAYGLKFL HDNDIVHRDM KPENVLLDAN GVAKLCDFGV SDWGHQVHGD LTSPIKLSTS
YVGSPPYSPP EVMILKEKSH AEIKNFAYDP FKMDFWGLGM LLFCIVYSGV PFQSATVNDH
AFRDYKFTHN RYSSDHPSFK NCQDYNKGPG SEFKWAAQFQ STGASRAAWK LCDPSVTHRY
NLEQLFNDPW FLGLEMCLYE HPEQDVNPFI LPGTGENYNG YISANSSVPN SRAASRRGTY
SRAQHDPEDD LHTPFKSMLD LVGQSSKPQG QLQPQTGDGP AKINTKVDTK VEPQYKTPIS
PSSMVDGISL NMSPSRNGHS GRPHSNSNPV RYPSDTSSSN ASIQSSDSGR PRSMLEIVAD
TNDEIRSFGI THPDGLLDSA DSCFSLLPQG DAEAKKAPGD FPKLLRNSSQ LRLDVNGMCE
LGYKIKKHHH NEISTVQMSN SNSRRR
|
|---|
| |