Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_8958 |
Symbol | TIF11 |
ID | 4839529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009045 |
Strand | - |
Start bp | 1412340 |
End bp | 1412774 |
Gene Length | 435 bp |
Protein Length | 145 aa |
Translation table | 12 |
GC content | 45% |
IMG OID | 640390844 |
Product | translation initiation factor eIF1A |
Protein accession | XP_001385274 |
Protein GI | 126137501 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0361] Translation initiation factor 1 (IF-1) |
TIGRFAM ID | [TIGR00523] eukaryotic/archaeal initiation factor 1A |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | CCACTGTCTC CACTTATCTC GTCACTACGG GACAGCAGCT GAACCACCGC TGTTCCGCTC GATTCTCTGC TCTCTAGAAC ACCATACTAC ACCATCTACA GCATTGTATA CGCTCCGGCT GTCTCGGTGT ATGTTTCCGT ATATCTTCAG ATCTACATTT TTCTCTGGCT AATTCTCATT CTCGCTATTT CTTTTCCAGT TCCCAGAAAG AGAAAGCTCG CCGTTTGGCA CGGTCCGACT TTTCTTTTGT CGTTCCAGAA TTCGGCACTA ATTTGTGTAT CACAGATCGA TGCCAATTTC CTCCTTGGAT TATTATATAT GCTTTATCGA CCCCATGTCT AGCACCCACC ACTTTTCTTT ATTCCTTACT GTAGCTTGAG CTGTATGTCG TGTTAGAAGT GTCGCTGTTT CGTTGATATT TGTGAATTAG CGTCGACTTC CTATCCGACC GTCCCACACG TTGTCCCTGT CTGAAATTTC TAGAGCTGAG AATAACGAAG CCATATTCAC GTAATACGTC CGAACACCAT ACCACCACCA CGACAGATAC AAAGATACAA CCTGCTATAT ATAAGTGTCG TGCCCTAACT ATCCATATCT ACGGCCGCCA TCAGTATCAT TTCTCGATAT AATTCTCGTT GCTCAGTCCA TCGCCGTTTC ATTAATCATC ACGACTAGTT GTAACAAATT TCATCATCCA AGCTGTCATT GACAATTCTT ACACAACAAC AATGCCTTTG ACCGAGAAGC CTCATAACAG CATCAAGAAG ATCTTCAAGC GGGATACCAC CCCCGTTTCG GACTCGTCGC TGCCCTCTTC GGCCAATAAC TCGCACATAG GACTTCTGAA ACTCTTCCAC CACCACAACG ACAAAACACC TGCTGCCGTA GCCAGAGACT CCAATTATGT TCTCAGTAAC GGAGTCAACA CCAATAACAA TAGCACTAGC AAAAAGTCCG GAAACTCTCC TGTTGCAGCG GGAGCTCCTG CTGTACCCAG GAACTCTTCC TCCCTTTCAC TCAAGAGAAG AAACACCAAC CCAGCACGTC TTGGTAACTC TTCGTCTTCC ACCTCTCCGC TGGTGCCGAG CGACGATAAG ACTGCGGTAA CCCACGGACC AAAAGAATCA AAACGACTTA CTCGTGCCGA AACTTTGGCT CACATAAATT CTGTGAATAA CAAAAATGCA AGAAACACCT TCAACAAAGC CCATCTCCCC CAGAATTTCC AGCAGCCGAT ACTGGCTACA CCCTCAGCTC ACGCTGGAGG AGATAAGATC GTATACAATC CCTACGGCCT CAACAAAAAT CCTACGCAAG AAGCCCCTAA GAGCACCTCT TTCTACCTCA GTGGAGTCAG CGATGGTGAA CGAGTTTTGG CTAACCCTGT AGCCGACCCC AACGAGTATT TACCCGCAGA CTTGAAGCAG GAGCATGTGA ATTTGCTTGA CATGTTTGAA ATCGATGCCA ATACGAAGAA GTTGGGAGAC GGAGGCTCAT CTGATGTGAG AATCATCAAT GCTATCAGCC ACAAGAAATC GGTCTATGCA TTGAAAAAGT TTACTTTACT TTCAAAAGAG TCTGATCAAG ATTTCTATGA GAGAGTCACC AAGGAATTCA TCATCTCCAA GAAGGCAGCT GTGTCGAGAC ATGTCGTGGA CGTTATAGCA CTTGTGAGAG TCCAGTCACA GACGAACTTG ACCAGAGGTT GGGGGATTGT GTTGGAATTC TGTAACGGCG GTGACATGTT CAGTGCCATC ATCAAACCGG GTTGGAAACG CACTCCTCTC CACGAGAAGT ACTGTTTGTT TAAGCAAATA GCGTATGGCT TGAAGTTCTT GCACGACAAC GATATTGTCC ATCGTGACAT GAAACCAGAA AACGTCCTTC TTGATGCCAA CGGAGTGGCC AAATTGTGCG ATTTCGGGGT TAGTGACTGG GGCCACCAAG TTCATGGCGA TCTCACTTCT CCCATAAAGC TTTCCACATC TTACGTTGGC TCGCCTCCTT ACTCTCCTCC TGAAGTCATG ATTCTTAAGG AGAAATCTCA TGCTGAAATC AAGAATTTTG CGTACGATCC GTTCAAGATG GACTTCTGGG GTTTGGGAAT GTTGCTTTTC TGTATCGTTT ACTCTGGAGT TCCATTTCAA TCTGCTACCG TGAACGACCA TGCCTTCCGA GACTACAAGT TCACCCACAA CCGGTACTCT TCCGACCATC CATCTTTCAA AAACTGCCAA GACTACAACA AAGGACCTGG CTCTGAGTTC AAATGGGCAG CCCAGTTTCA GTCTACTGGT GCTTCCAGAG CTGCCTGGAA ACTCTGTGAT CCTTCCGTTA CTCATAGATA CAACTTGGAG CAGTTGTTCA ACGATCCCTG GTTCTTGGGT TTGGAAATGT GTCTCTACGA GCATCCAGAA CAAGACGTAA ATCCATTTAT CTTGCCTGGA ACAGGCGAAA ACTACAATGG CTACATCTCA GCGAACTCTT CCGTACCTAA CTCTAGAGCC GCTTCTCGTA GAGGAACATA TTCACGGGCC CAACACGATC CAGAAGATGA TTTACATACT CCGTTCAAGA GCATGTTGGA TTTGGTAGGC CAGAGCTCGA AACCTCAGGG CCAATTACAA CCACAGACCG GCGATGGTCC AGCAAAGATC AACACTAAGG TAGACACCAA GGTAGAACCC CAGTACAAGA CTCCCATTAG TCCTTCCAGT ATGGTGGACG GGATTTCGTT GAACATGTCA CCTCTGAGAA ATGGCCATAG TGGACGTCCT CATAGTAATT CTAATCCTGT AAGATACCCA TCCGACACCA GTAGTTCTAA TGCCTCTATC CAGTCTTCGG ATAGCGGAAG ACCAAGATCC ATGTTGGAAA TTGTGGCTGA CACTAGTAGA GATGCGAACA ATCTTCCTGC TGTCAAGGAG GTGGAAACTG CTGAGGAAAA GAACGACGAT TTTTCTCCAG AAATATTTCC CTCTATTGAA CCAGTGCCGG AAAAGAAAGA AGAAGATGAA CATGATGACG TTTTGAAGGA AGAGAATACG AAAGAAGAAC ATGATAAGAT AGATGTCGCA AAAAATGAAG AGGATGCAAA CATAGACGAC GTAAAGAAGG AAGAACAGAA AGAAGATAAA AAAGATGATG AAATTCGCTC TTTTGGCATA ACTCATCCAG ATGGGTTATT AGACTCCGCT GATTCCTGTT TCAGTTTACT CCCTCAAGGC GATGCTGAGG CCAAGAAAGC ACCGGGAGAT TTCCCGAAGC TTCTTCGTAA TTCGTCTCAG TTACGGTTGG ATGTCAACGG AATGTGCGAG TTGGGCTACA AGATCAAGAA GCATCATCAC AACGAAATCA GCACTGTTCA AATGTCCAAT TCCAATTCAA GAAGAAGATA ATGTTTTCCT TCACCCACCG GGGATCTTGA TACAGGAAGC GAAGTGCTGT TTATGTCAAA AATTAGAAAG GACAAGTTAT GAGTTGAGTT CTTATTTATT CAGGATACAT TCATACATTC ATTAGATAGT TTAGACTAAT ACACGTGATA CAG
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Protein sequence | KGGKNRRRGK NDNSGQKREL IYKEDGQEYA QITKMLGNGR IEVSCFDGIK RMGHIRGKLR KKVWMGQGDI ILVSLRDFQD DQCDVVHKYN SDEARTLKNV GELPESAKIN ETDTFGADDD EDVNFEFGAE DESEEEDDDL DIDDI
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