| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84214 |
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| Symbol | SDT1 |
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| ID | 4839592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 959905 |
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| End bp | 961072 |
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| Gene Length | 1168 bp |
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| Protein Length | 287 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640390907 |
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| Product | suppressor of deletion of TFIIS |
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| Protein accession | XP_001385193 |
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| Protein GI | 150865821 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.538947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0127046 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TCGTCGAAGA AAGATATTAA GAGTTTATTA GATAGAAAGA ACTTGTTGAA CCTTTCTAGA
ACTTTTCAAT TTTTGTTTCT ATTTTTCGAT TTCAGCATCC ATTTCCAGAT ATTTTTCACT
CCTTAGTCAT CTGAACCATA ATATAAATCT ATAATTCGAT TTCATCACAA CAAATACTAA
ATTTCATCTT TTTCAAATAC AAATTTATAC ATGAAATCAT TCTGAAAACT CAGAATCTTC
TAACCTCTCA GCCCTCACAC AGCAGATCTA CACACGATGA CTATTTCAAA ACTCGAAGTC
CAGACGAATC CCGTTCACTA CACCAACCCA GAGCTCACGG AACAGGAACA ACTTCCAGGA
ACTATTGTCC ACTTGCCCTT TGGCTACGGG CCCATGCCAG AAAGCTTGAC CAACAAGAAG
ATCTTCTACT TTGACATCGA TAACTGTTTG TACCATCGTT CAACGCTGAT CCACGAATTG
ATGCAAGTCA AAATCCACAA CTATTTCAAA GACAACCTAC AGCTCAACGA CGAAGACGCC
CACAAGTTGC ACATGAACTA CTACAAGACC TACGGGTTGG CTATTGAAGG TTTGGTAAGA
AACCACCAGG TGGATGCTTT GGACTACAAT GCCCAAGTTG ATGATTCTTT AGACTTGAAA
TCTGTTTTGT CGTACAATGC TGAATTGCGT AAAATGTTGA TTGCTATTAA GGCAAGTCAT
CAGTTCGACT ATTTCTGGTT GGTGACGAAC GCGTACAAGA ACCACGCCTT GAGAGTGGTA
TCGTTCTTAG GATTGGGTGA CTTGTTTGAA GGCTTGACCT TTTGTGATTA CTCTAAGTTC
CCTATCATCT GTAAACCTAT GGCCAAGTTC TTTCATGGTA CACTTAACGT TACCAATGTG
GACTATAATG ACGCCGAGGT CATGAAGAAA CAGTACTTTA TCGACGACAG CGAGCTTAAC
GCAAAGGCTG CTCACAAGTT GGGCTTTGGA AATGTGATCC ATTATGTGGA AATTGACCTG
GACTACGATA GAATCAAAGC AAAGCCCGAT TTTGAAGAAT ATTATGGAGC TGGCGATAAT
AGCGACAAGT CCAAAATCAG AATACTCCGC CACATACTTG AATTGCCTTC TGTCTTGTAG
ATCATATAGA ATAATAAACA CAATATAG
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| Protein sequence | MTISKLEVQT NPVHYTNPEL TEQEQLPGTI VHLPFGYGPM PESLTNKKIF YFDIDNCLYH
RSTSIHELMQ VKIHNYFKDN LQLNDEDAHK LHMNYYKTYG LAIEGLVRNH QVDALDYNAQ
VDDSLDLKSV LSYNAELRKM LIAIKASHQF DYFWLVTNAY KNHALRVVSF LGLGDLFEGL
TFCDYSKFPI ICKPMAKFFH GTLNVTNVDY NDAEVMKKQY FIDDSELNAK AAHKLGFGNV
IHYVEIDSDY DRIKAKPDFE EYYGAGDNSD KSKIRILRHI LELPSVL
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