| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_83789 |
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| Symbol | |
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| ID | 4839608 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 267188 |
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| End bp | 268348 |
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| Gene Length | 1161 bp |
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| Protein Length | 376 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640390923 |
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| Product | predicted protein |
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| Protein accession | XP_001384710 |
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| Protein GI | 150865476 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG5242] RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 |
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| TIGRFAM ID | [TIGR00627] transcription factor tfb4 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.362151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACGCGA TATCTGACCG AGTCTTCACG GAGACTACTC TGACGGAGAC CTCTAATGAT
GACCCGTCAC TTTTGACGGT CATTCTCGAT GTCTCACCAG CTGGTTGGTA CAGAATCCGA
GATCAAACAT CAATCGACGA ATTGGCCAAG TCACTTTTAG TTTTCATGAA TGCCCATTTG
TCACTCAACA ATTCCAATCA GGTGGCATTT ATAGCGAGTA CACCACAGAA ATCGAAGTTC
TTGTTTCCTA ATCCAGAAAT AGACTACGAC GAGATTCGAA CCAGTTCTTC TAGCTCTGGT
TCTGCCTCAA ACCAGCATCA GAGTCAAGAT ATCGACTCCA ATGCTAGAGA AGAAACACCT
ACTTTAGTAT CTAAGGACAT GTATAGACAA TTTCGAGTTG TTGATGAAGC TGTTCTCGAG
GAGTTGAACG TGGTTTTCGA CGAAATTGCT AATGGGATAC AAGATATAAA TAATAACTCT
ACTCTATCCG GAGCTCTCAG CATGGCTCTA ACATATACAA ACCGAATGTT GACTCTTGAC
CAACTGATTT CTACAACTAC GGCTTCAGCC ATCAACTCTA CTACTAGTAT GGGAGCAGGT
TCTGGGTCTG GAAACACAGC TACCAATTCT TCTACCAGCA ATCCTTCCAA CAGCATTACT
TCTATGAAAT CGCGTATTCT TATTGTCACA GCCAACGACG AAGACGATGT CAAGTATATT
CCCGTGATGA ACTCGATCTT TGCGGCTCAG AAAATGAGGA CTTCCATTGA TATAGCCAAG
TTGGGCTTTG AGGACTCGTC ATACTTGCAA CAAGCGGCGG ATGCTACTAA TGGGATTTAC
TTCCACGTTC ATGATCCTCG TGGAATTGTG CAGACTTTGA CTTCTGCTTT TTTCATAGAA
CCTTCTATCA GACCGTTCAT CATACTCCCA ACCAACTCTA ATGTCAACTA CAGAGCCAGT
TGCTTTGTCA CCGGCAAATC CGTGGATATA GGCTTTGTTT GTTCAGTGTG TCTCTGCATC
ATGAGCAAGA TTCCACCGTC TGGCAAATGC CCGGCCTGCG AATCGGTGTT TGACGAAAAG
ATCATAGCCC AGTTGCTGAA AGGTCCTTCT GTTCTTTCCA AGAAGAAGAG AAAGATAGAT
ACGAATGGTG CAGCCAAATA G
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| Protein sequence | MDAISDRVFT ETTSTETSND DPSLLTVILD VSPAGWYRIR DQTSIDELAK SLLVFMNAHL
SLNNSNQVAF IASTPQKSKF LFPNPEIDYD EIRTSSSSSG SASNQHQKTP TLVSKDMYRQ
FRVVDEAVLE ELNVVFDEIA NGIQDINNNS TLSGALSMAL TYTNRMLTLD QSISTTTASA
INSTTSMGAG SGSGNTATNS STSNPSNSIT SMKSRILIVT ANDEDDVKYI PVMNSIFAAQ
KMRTSIDIAK LGFEDSSYLQ QAADATNGIY FHVHDPRGIV QTLTSAFFIE PSIRPFIILP
TNSNVNYRAS CFVTGKSVDI GFVCSVCLCI MSKIPPSGKC PACESVFDEK IIAQLSKGPS
VLSKKKRKID TNGAAK
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