| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_83705 |
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| Symbol | NUP4 |
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| ID | 4839364 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 597861 |
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| End bp | 600398 |
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| Gene Length | 2538 bp |
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| Protein Length | 740 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640390679 |
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| Product | nuclear pore protein |
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| Protein accession | XP_001385122 |
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| Protein GI | 150865775 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5171] Ran GTPase-activating protein (Ran-binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.170076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0148486 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CCAATCCACA CATCAGAATG TCGAAAAGAG GCGCTACCGA TCAGATCACG AAGGATAACT
TCAACGAAAG AGATGATGAC GATGAGCCTC AAGTCTTCAA GGCTTCTGCT GAAGTGATGG
CCAAGCGAAA AATCATACAA CCAAAGAGAA GAAACATCGG TGGAAACTCG ACTTCTATAT
TCGGAGCATC GGCATCTTCA GCATCTTCAG CATCTTCAAC TCCATCAGTT CCTGTAAGTG
GAAAGCCAGC CTTTGCTGGC TTGAATGGCT CTTCCACATC TGAACCAGCC AATCCATTCA
AGCTATCGAA GTCGACAGCA TCGACAACTT CAAGTTCAAC AACAAATTCA TCAACTTCCT
CTTCTCCTGC TGAGGCTGTT AAAAACAACA AAATAAAGGC ATTGAACAAC AAGTTGGTAC
TGACCCTTGC TAGCAAGAAC ACAGAGGGAA CCGTAGCGAA CTTCACTCCG TTGCTTAATA
AGTATATCCA GTACTACAAG GACATTGAAG CAGAGTACAT TTCTTCATCA ACTACAGAGT
CCAATACGAC CATCCCATCA TTCACGGGAC TCTCTTCCAC ATCTGCCAAT TCGGCAACTA
CCAGTAATAC TACTGGAACC AACGGATTAT TCAAATTCAA GCCAACTGTA GCTCCTTCCG
TTTCAAAATT TACAGCTGTA GTTCCTCCAA TTCCAACAGC TTCAAAGCCG ATTATTCCAG
TTGTTCAAGA AAAGAAGGAA GAACCTATAC AAGTAGAATC TGACTCCGAC TCTGACTCTG
AAGACGATGT CAAGGTGGAA GGACCCAAGT TCACATTGAC AGCCAATCCA ACCACAAAGA
GCTCCCCATT TACATTCGAT CCCAAGAAAC TTGCCAAAAA GAACGAAAGG GATGATTCTG
ACTCCGAGTC TGAGATCGAA ATCAAGGGTC CTACCTTCAC TTTCAACAAG CCAATCAAGG
ACGCTGTGTT CAAGCTCCCT TCTGATAAAC CAGCAAATAG TCTTTTCAAC TTCGGAACTA
CAAACGATGC TGCTAAATCA GAAGAAAAGA AGCTTGAAGA GCCGAAACCA GATGAACCCA
AACCTGCATT TTCCTTTACT CCAACTACCA ACTCTACTGC TTCCACTGAG AAGAAAGACC
CAGTGCTCGT TCCATTTTCA TTTGGTTCGG CTTCAGTAGA AAACAAAGAC AACGACAAGC
CAGGATTTTC GCACACACTG ACTTCCAGTG AAGAAAAGAA GGAAACCCAA AAGCATTTCG
CCTTTAATTC TACAACTGCG GCTACAGCCG AACCTAACCA AGCATTTTCA TTTGGTCAAC
TGCAACCTAC TACATTATTC GGATCTTCTG CTATTACAGC ATCTGCAAAG AAAGACGAGA
CAAAACCAAC ATTTTCATTT GGAATATCAA ATACCAATGG CGAAAAGAAT GCAGAACATA
CCAAACCGTT GTCTAGTTTT AACCCAACTG ATACCGAAAA TAGGGCCGAA CAACCCAAGC
CATTGTTCAG TTTTAATCCA CCAGTTTCTT CTGAAAAGAA AACTGATTCT AAACCAGCTT
CGTTCTCTTT CGGATCTGCC ACTTCCGAGA AGAATGATTC TCAACCATCT CCGTTCTCGT
TCGGTTCAGC CATTTCTGAA AAGAAAAACG AAGTAAAGCC ATCAACGACC TTGTCATTCG
GTTCCAACAA TGGCAATACC TTTGGTTTTG GCCAAAAGAA TGGTGGCGAC AATAAGTCTG
CTGGAAATAG CTCGGAAGAA CCTACATTTA ATTTTGGGTC ATCTACATCC ACCTTCAACT
TTTCGCAAAC CAAGAAAGAC GATAAAGAGA AGAGTTCAGG AAGTTTTGGT ACTTCTTCAA
ACAGTGAAAC TTCCACTAAA CCGGCCTTCC TGTTTTCGTT TAACCCAACA GCTAGTTCGG
GATCAGACTC TTCCGCGAAA CCAGCATTCA CGCTTGGTTC CACTAACGGG TCGTCAGTAT
TCGGAAACTC TTCGGCAACT AATGCATTTT CTGTAGAATC TACTACTTCT GAGTCCAAGG
ATACCGACAA GGATGATGAT AAAGTGCAGG AAGAAGAGAC AGGAGGAGAC TTTGCTCCGG
TTGCTCAATT AGGTTCTGAA AAAGTGGAAA GTGTGTCTGG AGAAGAATTA GAAGATACTC
TATATACTAA GCGTGCCAAG TTGATGTTGT TCGATCCAAG CTCGAAGGAA AATCCATACG
TCAACAAGGG AGTTGGTGAT TTAAAAGTAT TGAAAAACAA AGAGACACAG AAATCAAGAG
TGTTGATTAG AGCTGATGGC GGATTAAGAG TATTGTTGAA CATAGCTATT TCCAAGGATA
TGACATATAC GCAGATCGGA AATGGTTCAA TGGTGCGTAT TCCAACTGTT AACCCTCTTG
ATACTTCCAA GATCGAGACT TATGTGCTAA AAGTGAAGAC ACCAAGTGAT GGTGCGGATC
TTTTGAAGCA TTTGGATGAT AATAAGCTGT AGGTGCCTGA TTATTAGATA ATTTTGTATT
ATAAATTAAC TGTACATG
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| Protein sequence | MSKRGATDQI TKDNFNERDD DDEPQVFKAS AEVMAKRKII QPKRRNIASA SSASSASSTP
SVPVSGKPAF AGLNGSSTSE PANPFKLSKS TASTTSSSTT NSSTSSSPAE AVKNNKIKAL
NNKLVSTLAS KNTEGTVANF TPLLNKYIQY YKDIEAEYIS SSTTESNTTI PSFTGLSSTS
ANSATTTSKP IIPVVQEKKE EPIQVESDSD SDSEDDVKVE GPKFTLTANP TTKSSPFTFD
PKKLAKKNER DDSDSESEIE IKGPTFTFNK PIKDAVFKLP SDKPANSLFN FGTTNDAAKS
EEKKLEEPKP DEPKPAFSFT PTTNSTASTE KKDPVLVPFS FGSASVENKD NDKPGFSHTS
TSSEEKKETQ KHFAFNSTTA ATAEPNQAFS FGQSQPTTLF GSSAITASAK KDETKPTFSF
GISNTNGEKN AEHTKPLSSF NPTDTENRAE QPKPLFSFNP PVSSEKKTDS KPASFSFGSA
TSEKNDSQPS PFSFGSAISE KKNEVKPSTT LSFGSNNGNT FGFGQKNGGD NNETSTKPAF
SFSFNPTASS GSDSSAKPAF TLGSTNGSSV FGNSSATNAF SVESTTSESK DTDKDDDKVQ
EEETGGDFAP VAQLGSEKVE SVSGEELEDT LYTKRAKLML FDPSSKENPY VNKGVGDLKV
LKNKETQKSR VLIRADGGLR VLLNIAISKD MTYTQIGNGS MVRIPTVNPL DTSKIETYVL
KVKTPSDGAD LLKHLDDNKS
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