Gene PICST_78490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_78490 
SymbolCYC1 
ID4839649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009045 
Strand
Start bp1306607 
End bp1307400 
Gene Length794 bp 
Protein Length110 aa 
Translation table12 
GC content44% 
IMG OID640390964 
Productcytochrome c 
Protein accessionXP_001384941 
Protein GI126136835 
COG category[C] Energy production and conversion 
COG ID[COG3474] Cytochrome c2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.635362 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.967273 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TGCACCGGAT TGATGTCATG ACGGAGATTT TTGCAGGTTG TCTGCACCTG CACACACTCC 
ATCCAATGAG AGCTCATTGG TTAGCAATTA TGGCATTATT GGCTGAATTT TTCAGTCTGA
TATAAAAGGA AGAGGAGTTG CCGAATTTCT GGCAGAAGCT TGTTTTCTTT TCAGTTTTCC
TCTGCTAGCC AATTAACTTC ACTACACACA AAAATGCCAG CTCCATTCGA AAAGGGTTCC
GAAAAGAAGG GTGCCACCTT GTTCAAGACC AGATGTTTGC AATGTCACAC CGTTGAAGAA
GGTGGTCCTC ACAAGGTTGG TCCTAACTTG CACGGTATCA TGGGCAGAAA GTCCGGTCAA
GCCGTTGGTT ACTCTTACAC TGACGCCAAC AAGAAGAAGG GTGTCGAATG GTCCGAACAG
ACCATGTCTG ACTACTTGGA AAACCCAAAG AAGTACATCC CAGGTACCAA GATGGCTTTC
GGTGGTTTGA AGAAGCCTAA GGACAGAAAC GACTTGGTCA CCTACTTGGC TTCCGCCACC
AAGTAAGCGG CTTCCAGCAT AGAGTGAACG AAAGTGCTCG CCCAATATCT CGGTAACGAA
ACCACTAGTC AAAATCATGC CTTTTCGTTC AATGCACCTG TTCTGCTATA GATTTATTTC
TTGTAATGCC AATGAGCTTC AATCTGGTTG AGTCTGGAGA CTCGGCGAAA CAGTCGGCTT
GTATTTCCTA TGGTCATTTC TTACTGTCTG TACATACAAC ATCATTCAAT ACATTCATAT
TTATTATGTT TACT
 
Protein sequence
MPAPFEKGSE KKGATLFKTR CLQCHTVEEG GPHKVGPNLH GIMGRKSGQA VGYSYTDANK 
KKGVEWSEQT MSDYLENPKK YIPGTKMAFG GLKKPKDRND LVTYLASATK