| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_77977 |
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| Symbol | RPA135 |
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| ID | 4839612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 1443170 |
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| End bp | 1446777 |
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| Gene Length | 3608 bp |
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| Protein Length | 1167 aa |
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| Translation table | 12 |
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| GC content | 46% |
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| IMG OID | 640390927 |
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| Product | DNA-directed RNA polymerase I |
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| Protein accession | XP_001384965 |
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| Protein GI | 150865654 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.481222 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TCTTCCCATT GGAACGGAAC TCTCGTCACA CATTTCAGAA GCTATGAGGG CTGATTTCAG
AACGCTTGAG CGTGAAAAGC GATTCCAGAA CCCTCCCAAG GACGAAAGTG CCTACCCACT
CTTGAAAGAT GCTGTAGCAC CACATGTAGG TTCGTTCAAT GCCTTGACCG AGGGACCTGA
CGGCGGTCTT TTGAATCTTG CAGTAAAGGA TATTGGTACA AAGACCATTT TCGACTCCAA
CGACTCGGAA AGACTAGGAA ACAAGCTCCG GATCAGAGTG GAGTCTTTAC AATTGGCCAA
GCCTGCTGTG CCTAACAATG ACAAGATCTC CATCAACAGA AGAACTTTCC CAGCTGAATG
TAGAGAAAGA ATGTCGACAT ATCGTTCAAG ATTGATGTTG AAAGTAGCTT GGTCAGTCAA
CGATGGCGAT GAGGTTTCTG AGATAAGAGA AGCCGGCCAG GTGCCCATCA TGTTGAAGAC
TAACAGATGT CATTTGGAAA AGTTATCTCC ACAAGAGTTG GTGGAGCAAA GAGAGGAGTC
TGACGAGTTA GGAGGATATT TCATTGTCAA CGGGATTGAG AAGTTAATTC GTATGTTGAT
TGTGCAACGT AGAAACCATC CTATGGCCAT TATCCGTCCT TCTTTTGGTA ACAGAGGTGC
TGCCTACACC AAGTTTGGTA TCCAGATCCG GTCCGTCAGA CCAGATCAGA CATCTCAGAC
CAACGTTTTA CACTACTTGA ACGACGGTAA TGTGACATTC CGTTTTTCGT GGAGAAAGAA
CGAGTATTTG GTGCCCGTAA TGATGATCTT GAAGGCTCTT ATTGAGACCA ATGACCGTGA
GATTTTTGAC GGGATCGTCG GTGCAGACTC CGCCAATTCG TTCTTGACGG ATCGTTTGGA
ATTGTTATTG AGAACATACA AGCAATACAA CTTGTATTCC AAGCAAGAAA CACTTGCTTA
CTTAGGTGAC AAGTTCAGAG TCGTTTTTGG TGCTACACCA GATGTCTCAG ACATAGAAGT
GGGTAAGGAA GTATTGAGAA GAATTGTCTT GGTCCATTTG CCCGACAACG CTGACAAGTT
CCGCATGTTG TTGTTCATGA TCAGAAAGTT GTACTCGTTG GTTGCTGGTG ACTGCTCTCC
AGACAACCCC GATGCCACTC AGCACCAGGA AGTGTTGCTT GGAGGATTCT TATATGGTAT
GATCATCAAG GAAAAGATCG AGGAATACTT GCAGAACATA AACCTCCAGA TCCAGTCCGA
TATCAACCGT GGTGTAGCCA TCAACTTCAA TGACAGAAAG TACATGTCGA GAGTGTTCAT
GAGAATAAAT GAGAACATTG GTCAGAAATT GCAGTACTTC TTGTCGACTG GTAACTTAGT
GTCGCAGTCT GGTTTGGACT TGCAGCAAGT CTCTGGGTAC ACTGTTGTAG CCGAAAAGAT
TAACTTCTAC AGATTCATTT CCCATTTCAG AATGGTGCAC AGAGGGTCAT TCTTTGCTGA
ATTGAAGACT ACCACTGTCA GAAAGTTGTT ACCAGAGTCT TGGGGTTTCT TATGTCCTGT
CCATACACCC GATGGTTCGC CCTGTGGTTT GCTTAACCAT TTGGCCCATA AATGTAGAAT
TGCTACTGAA GCATCAGATG TCTCACAAGT TCCCAAGACT TTAGCGCAGT TGGGTGTATC
TCCAGCTCAC ACCTTTGCTG CCGGACCCAA CTTGTGCTGT GTCCAGTTGG ATGGTAAGAT
TGTAGGATGG ACCACCCATG AACAGGGTAA AATTGTAGCC GACACTCTCA GATTCTGGAA
GGTAGAAGGC GGCCATGGTC TTCCGCTCGA CTTGGAAATC GGGTACGTAC CTCCTTCCGC
CAAGGGTCAA TACCCTGGTT TGTATATCTT TGGAGGCCAC TCCAGAATGA TGAGACCTGC
CAAGTACTTG CCCTTGGACA AGCCAGATGT GTTGGGTCCT TTCGAACAAG TGTACATGAA
CGTTGCTGTA ACTCCAGCTG AAATCGAAGG CAATGTTCAC ACTCACGTAG AGTTCTCTCC
TACCAACATT TTGTCGATCT TGGCTAACTT GACGCCTTTC TCGGACTTCA ACCAGTCTCC
AAGAAACATG TACCAGTGTC AGATGGGTAA GCAGACCATG GGTACTCCTG GTGTGGCGTT
GATGCATAGA TCCGACAATA AATTGTATAG ATTACAGACT GGTCAAACTC CAATTGTCAA
AGCTAATTTG TACGATGATT ACGGCATGGA CAACTTCCCC AACGGTATGA ATGCTGTTGT
GGCTGTCATT TCCTATACTG GTTATGATAT GGATGATGCG ATGATTATCA ACAAATCTGC
TGATGAAAGA GGCTTTGGGT ATGGTACGGT CTACAAGGTG GAAAAGGTCG ACTTATCGCA
GTCCAGAAGA AGAGGCGATC CTATCACTCA GCATTTCGGC TTTGGTGACG ACGAATGGCC
CGAAACCTGG AGAGAGAAGT TGGATGCAGA TGGTTTGCCA TTGATCGGAG TCAAGGTAGA
AGAAGGCGAT CCTATCGTAG CTTTCTTTGA CGAGACCCTG GGCAAGACAA AAGTTAAAAC
ATACCACTCT TCAGAGCCAG CATACATTGA AGAAGTCAAG TTACTTGGTG ATGATAGCGG
TGACCAGGAA GGCCAACAGA TCACCATCAA GTACAGAATC ACCAGACAGC CTAATATTGG
TGACAAGTTC TCATCCAGAC ATGGACAAAA GGGTGTTTGC TCGAGAAAGT GGCCCCAGAT
AGACATGCCC TTCTCGGAAA CAGGTATTCA ACCCGATGTC ATCATCAACC CACACGCTTT
CCCATCTCGT ATGACTATTG GTATGTTTGT AGAGTCGTTA GCTGGTAAGG CAGGTGCTCT
TCATGGTATC GCTCAAGACT CCACTCCCTG GAAGTTCAGC GAAGACGATA CTCCTGCTGA
CTACTTTGGT GAGCAGTTGA GACTGGCTGG TTACAACTAC CACGGTAACG AACCCATGTA
CTCTGGTGCT ACTGGTGAAG AGTTAAGAGC AGACATCTAC ATTGGTTGTG TCTACTACCA
GAGATTGAGA CACATGGTGA ATGACAAGTT CCAAGTCAGA TCTACCGGTC CTGTCAACTC
CTTAACCATG CAGCCCGTTA AGGGTAGAAA GAGATCTGGT GGTATCCGTG TGGGTGAAAT
GGAAAGAGAT GCCCTCATTG GTCACGGTAC TGCCTTCATG CTTCAAGACA GATTGTTGAA
CTGTTCTGAC TACACCCAGA CGTCTCTCTG TCGCTCATGT GGTTCCATTT TAACCACACA
AACCACTGTA CCTAGAATAG GCTCATTGGC TACCATCAGA TGTCGCAGAT GTTCCACCAA
GTTGGACTCG TATGTACAAA AGTTTGGCTA TGCCAACGAC TCTGACATCT GGGAGGATGG
CCAGGGCAAG AAATTCGTTG GTGGAGATGA TACCACTACC GTTGCCATTC CATTTGTGTT
GAAGTACTTG GACTCCGAGT TGTCTGCCAT GGGTATCAAG ATGCGTTACA ACGTTTCTCC
TCGTTGAGCC CCTATTTGCA TATATTGTTA GTTTGTTTGT TAGTTGCATT GTAATTTACG
TTTTAAAG
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| Protein sequence | MRADFRTLER EKRFQNPPKD ESAYPLLKDA VAPHVGSFNA LTEGPDGGLL NLAVKDIGTK
TIFDSNDSER LGNKLRIRVE SLQLAKPAVP NNDKISINRR TFPAECRERM STYRSRLMLK
VAWSVNDGDE VSEIREAGQV PIMLKTNRCH LEKLSPQELV EQREESDELG GYFIVNGIEK
LIRMLIVQRR NHPMAIIRPS FGNRGAAYTK FGIQIRSVRP DQTSQTNVLH YLNDGNVTFR
FSWRKNEYLV PVMMILKALI ETNDREIFDG IVGADSANSF LTDRLELLLR TYKQYNLYSK
QETLAYLGDK FRVVFGATPD VSDIEVGKEV LRRIVLVHLP DNADKFRMLL FMIRKLYSLV
AGDCSPDNPD ATQHQEVLLG GFLYGMIIKE KIEEYLQNIN LQIQSDINRG VAINFNDRKY
MSRVFMRINE NIGQKLQYFL STGNLVSQSG LDLQQVSGYT VVAEKINFYR FISHFRMVHR
GSFFAELKTT TVRKLLPESW GFLCPVHTPD GSPCGLLNHL AHKCRIATEA SDVSQVPKTL
AQLGVSPAHT FAAGPNLCCV QLDGKIVGWT THEQGKIVAD TLRFWKVEGG HGLPLDLEIG
YVPPSAKGQY PGLYIFGGHS RMMRPAKYLP LDKPDVLGPF EQVYMNVAVT PAEIEGNVHT
HVEFSPTNIL SILANLTPFS DFNQSPRNMY QCQMGKQTMG TPGVALMHRS DNKLYRLQTG
QTPIVKANLY DDYGMDNFPN GMNAVVAVIS YTGYDMDDAM IINKSADERG FGYGTVYKVE
KVDLSQSRRR GDPITQHFGF GDDEWPETWR EKLDADGLPL IGVKVEEGDP IVAFFDETSG
KTKVKTYHSS EPAYIEEVKL LGDDSGDQEG QQITIKYRIT RQPNIGDKFS SRHGQKGVCS
RKWPQIDMPF SETGIQPDVI INPHAFPSRM TIGMFVESLA GKAGALHGIA QDSTPWKFSE
DDTPADYFGE QLRSAGYNYH GNEPMYSGAT GEELRADIYI GCVYYQRLRH MVNDKFQVRS
TGPVNSLTMQ PVKGRKRSGG IRVGEMERDA LIGHGTAFML QDRLLNCSDY TQTSLCRSCG
SILTTQTTVP RIGSLATIRC RRCSTKLDSY VQKFGYANDS DIWEDGQGKK FVGGDDTTTV
AIPFVLKYLD SELSAMGIKM RYNVSPR
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