| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_72696 |
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| Symbol | HAM1 |
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| ID | 4839424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 823285 |
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| End bp | 823964 |
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| Gene Length | 680 bp |
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| Protein Length | 194 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640390739 |
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| Product | inosine triphosphate pyrophosphatase, putative / HAM1 family protein |
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| Protein accession | XP_001385166 |
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| Protein GI | 126137285 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
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| TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.497197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.168714 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | CCAATTAGAA CAATGAGTAC CGTTACCTTT GTCACTGGCA ATGCCAACAA GCTCAAGGAA
GTGATTGCTA TTCTTTCAGG CTCTCAGTCT GAAGGCGGAG AATCGAAAGT TGGAAATTTC
ACTATTGTTA ATAAGTCGTT GGACCTTGAT GAGCTCCAAG GCAGTATAGA AGAAGTCACA
ATCCACAAGG CCAAGAGTGC TGCTGAAATT CTTGGTGGCC CAGTGTTGGT GGAGGATACC
TGTTTGGGTT TCACTGCCTT TAACGACCTT CCAGGCCCAT ACATTAAGTG GTTTGTGAAA
TCGGTTGGTT TACAGGGTTT GGTTGATATG CTCTACAAGT TTGAAGACAA GAGTGCTAAA
GCAATTTGTA CATTTGGATA CTGTGAAGGG CCAGGAAAGC CAGTTCAATT GTTCCAAGGA
ATCACCAAAG GATCCATTGT AGAAAGCAGA GGCCCTACCA ACTTTGGCTG GGATTCGATC
TTTCAGCCTG ATGGGTTTGA CAAGACGTAT GCTGAGCTTG ATAAAGAAAT CAAGAATAGT
ATCTCGCATA GATTCAGAGC CTTGGATAAG TTGAGAGACT TTCTTGTGAG CCAATAGATA
ATAAAGAAAA TAGAACTTAT AAAGGATAAA GTAAGATACA GTAATACAAA ATAGCAGTAG
GCCTCTGGTG GCAGTATCAA
|
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| Protein sequence | MSTVTFVTGN ANKLKEVIAI LSGSQSEGGE SKVGNFTIVN KSLDLDELQG SIEEVTIHKA
KSAAEILGGP VLVEDTCLGF TAFNDLPGPY IKWFVKSVGL QGLVDMLYKF EDKSAKAICT
FGYCEGPGKP VQLFQGITKG SIVESRGPTN FGWDSIFQPD GFDKTYAELD KEIKNSISHR
FRALDKLRDF LVSQ
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