| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_72279 |
|---|
| Symbol | GPH1 |
|---|
| ID | 4839086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 1552249 |
|---|
| End bp | 1555099 |
|---|
| Gene Length | 2851 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640390401 |
|---|
| Product | Releases glucose-1-phosphate from glycogen |
|---|
| Protein accession | XP_001384991 |
|---|
| Protein GI | 150865677 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATCTAGTCTT CTTCTAGTCT CAATTGATAT ACCCCGCAAC TAACATTCAT CATGGGTGAC
TATTTGACTC CCTCGGAATT GCCTCAGCCC AAGTTGAAAA GAACCAACAC TGGGTTCACG
CCCAACCAGA TTATCGCCCT CGATGCCTCC ATCCCGGAAC TGGCCAAACA CATCTGGTAC
AAGTACTCGC AGTTGAAGGT GTTGGACTCC AAGAAGCAGA CCGCTACCAC CGAAGACGAT
GTCTTGACCA ACAAGGATGC CTTTGAGGAG CTGTTTGTCA AACATGTGGA AACGACTTTG
GCCAGAAACA TGTACAACTG TGACAACTTG GCTGCCTACC AGGCCACTTC TAACACTATC
AGAGACGCGT TATTGATTGA CTGGGCCAAC ACTCAGCAGA AGCAGACCAT CCAGGATGGA
AAGAGAGTGT ACTACTTATC TTTGGAATTC TTGATGGGAA GAGCCATGGA CAACGCTTTG
ATCAACTTGA AGCTGAGAGA TAACACCAAG AAGTCATTGA CGGAATTGGG TTTCAATTTG
GAAGACGTTT TGGAACAGGA GCCAGACGCT GCCTTAGGTA ACGGTGGTTT GGGTAGATTG
GCTGCCTGTT TCGTTGACTC TCTCTCATCG AAGAACTATT CCGGTTGGGG TTACGGTTTG
AACTACCAGT ACGGTATTTT CAAGCAGAAG ATTGTTGATG GCTACCAGAT CGAAACTCCA
GACTACTGGC TCAAGTACTC AAATCCATGG GAAATCATGA GAAGTGAAAT CCAGATTCCT
GTAGACTTCT ACGGCTATGT GTATGAAGAT CATGACCCAA ACACTGGCAA GGCTAAGAAG
ATTTGGGCTG GAGGTGAGAG AGTTCTTGCT GTGGCTGCCG ATTTCCCAAT TCCTGGTTTC
AACACAGACA ACACCAACAA TTTGAGATTG TGGAATGCCA AGCCCACCGA AGAGTTTGAT
TTCACCAAGT TCAACGCCGG TGACTACCAG CAGTCTGTAG GCGCTCAACA AAGAGCCGAA
TCCATCACCT CTGTCTTGTA CCCTAACGAC AACTTTGAGA GTGGTAAGGA ATTGAGATTG
AAGCAACAGT ACTTCTGGGT CGCTGCTTCA TTGCACGATA TTGTTCGTAG ATTTAAGAAG
AACCACAAGA ACAACTGGAA GAAGTTCCCA GACCAAATCG CCATCCAATT GAATGATACT
CATCCAACTC TTGCCATTGT CGAATTGCAA AGAATTTTGG TAGATTTGGA AGATTTGGAA
TGGAACGAAG CCTGGAACAT CGTCACCAAG GTGTTTGCTT ACACTAACCA CACGGTTATG
TCTGAGGCAT TGGAAAAGTG GCCTGTAGAC TTGCTTGGTA GATTGTTACC TCGTCATTTG
GAAATCATCT ACGATATCAA CTTCTTCTTC TTGAAGGAAG TTGAACGCAA GTTCCCAGAC
GACAGAGACT TATTGGGTAA GGTTTCTGTA ATTGAAGAAA ACGCCCCCAA GTCTGTAAAG
ATGGCCTTCT TGGCTATTGT TGGTTCTCAC AAGGTGAACG GTGTGGCTGA ATTGCACTCA
GAGTTGATCA AGACGACCAT CTTCAAGGAC TTTGTCAAGG TGTTCGGTGA AGACAAGTTC
ACCAACGTCA CCAATGGTAT TACTCCTAGA CGTTGGTTGA GACAAGCCAA CCCAGAGTTG
GCAGCCTTGA TTGCCGAGAA GTTGAACGAT CCAAACTACG AATACTTGAC CAACTTGGGC
CGTTTGAAGA AGTTGGAAGA GTTTGTCAAC GACGACGAAT TCTTGAAGAG GTGGGATATC
GTCAAATTCA ACAATAAGGT GAGATTAGCT GCGTTGGTGA AAGAAACCAC TGGTGTAGTA
TTGGACCCAA CTGTGTTGTT TGATGTTCAG GTCAAGAGAA TCCACGAGTA CAAGAGACAG
CAGTTGAACA TCTTTGCCGT TATCTACCGT TACTTGAAGA TCAAGGAATT GTTACTGCAA
GGCGTTTCTG TTGATGAAAT TAAGGAAAAG TACTACATCC CCAAGGCTTC CATCTTTGGT
GGTAAGGCTG CTCCCGGTTA CTACATGGCC AAGACGATTA TCCACTTGAT CAACAAGGTT
GGAGACATCG TCAACAATGA CCCAGAAATT GGTGACTTGT TGAAGGTTGT TTTCATTCCA
GATTATAACG TGTCCAAGGC AGAAATCATT ACTCCAGGTT CCGATTTGTC CAACCACATC
TCGACTGCTG GTACTGAAGC TTCCGGTACT TCCAACATGA AGTTTGCCTT GAACGGTGGT
TTGATTATTG GTACTGTTGA TGGTGCCAAT GTCGAAATTA CCCGTGAAAT CGGTGAAGAA
AACATCTTCT TGTTTGGTAA CTTGGCTGAG TCTGTTGAAG ATTTGAGACA CAAGCACATC
TATGAAGGTG TGCACATTCC TCAGACTTTG GCCCAGGTAT TCTCTGCAAT TGAATCGGGT
ATCTTCGGCA ATCCAGACGA GTACAAGGCA TTGATCGATG GTATCAAGTA CCACGGCGAC
TACTACTTGG TCAGCGACGA CTTTGAGTTG TTCTTGGCTG CCCACGTGAA GTTGGAAAAG
GTGTTTGGAC ACCATGGAGG AGACGCTAGC GACACCGACC ATTTGCACAA GTGGGTCAAG
AGTGCGGTGT TGAGTGTAGC CAACATGGGT TTCTTCAGTA GTGACAGATG TATCGATGAG
TACGCCGAAG ACATCTGGAA CATCGAGCCT TTGAACCAAT AGAGTGTCCG TAGCGTTTTT
TCAATTCTCT ATCTCTATAC ATTTTACAGC TTCGTCTTGT TTTGAGACGG TTATGATTGC
TTTTAGTTTT TAGTTATACA TGTGTTTGTT G
|
|---|
| Protein sequence | MGDYLTPSEL PQPKLKRTNT GFTPNQIIAL DASIPESAKH IWYKYSQLKV LDSKKQTATT
EDDVLTNKDA FEESFVKHVE TTLARNMYNC DNLAAYQATS NTIRDALLID WANTQQKQTI
QDGKRVYYLS LEFLMGRAMD NALINLKSRD NTKKSLTELG FNLEDVLEQE PDAALGNGGL
GRLAACFVDS LSSKNYSGWG YGLNYQYGIF KQKIVDGYQI ETPDYWLKYS NPWEIMRSEI
QIPVDFYGYV YEDHDPNTGK AKKIWAGGER VLAVAADFPI PGFNTDNTNN LRLWNAKPTE
EFDFTKFNAG DYQQSVGAQQ RAESITSVLY PNDNFESGKE LRLKQQYFWV AASLHDIVRR
FKKNHKNNWK KFPDQIAIQL NDTHPTLAIV ELQRILVDLE DLEWNEAWNI VTKVFAYTNH
TVMSEALEKW PVDLLGRLLP RHLEIIYDIN FFFLKEVERK FPDDRDLLGK VSVIEENAPK
SVKMAFLAIV GSHKVNGVAE LHSELIKTTI FKDFVKVFGE DKFTNVTNGI TPRRWLRQAN
PELAALIAEK LNDPNYEYLT NLGRLKKLEE FVNDDEFLKR WDIVKFNNKV RLAALVKETT
GVVLDPTVLF DVQVKRIHEY KRQQLNIFAV IYRYLKIKEL LSQGVSVDEI KEKYYIPKAS
IFGGKAAPGY YMAKTIIHLI NKVGDIVNND PEIGDLLKVV FIPDYNVSKA EIITPGSDLS
NHISTAGTEA SGTSNMKFAL NGGLIIGTVD GANVEITREI GEENIFLFGN LAESVEDLRH
KHIYEGVHIP QTLAQVFSAI ESGIFGNPDE YKALIDGIKY HGDYYLVSDD FELFLAAHVK
LEKVFGHHGG DASDTDHLHK WVKSAVLSVA NMGFFSSDRC IDEYAEDIWN IEPLNQ
|
|---|
| |