| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_67900 |
|---|
| Symbol | RTA1 |
|---|
| ID | 4839299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 1183766 |
|---|
| End bp | 1185632 |
|---|
| Gene Length | 1867 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640390614 |
|---|
| Product | putative transporter or flippase |
|---|
| Protein accession | XP_001384906 |
|---|
| Protein GI | 150865614 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0276377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.165515 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ACCCTATCTT GCAACAACAC CTGTATCCAA CTAGATAACT AGAGGCTACT GAAGACACCA
TCCTTATTTT GTCATTTAGC ATATTCTCAG ATCGACTCGA TTTTCAATAC TGCTAATACT
TTTTCACTTC GAATTTCTTC CCATAGATTT ATCCTACACA CCTCGGAATG TCACAATTCT
TCCCCGATGG ACTTCTCACG AGTCTTCCAA CGAAGACGAC GCTTCTATCC GTAAACCCGA
CCAAAAGCGC AGCCTTATTG AGCAAACTCA CATCAGCTAC TGCAGCCATT GCTACCAAGC
ACGGAAAGGG AGGCGTGCAA GCCACCCGTG CACTTATAGG AGCTCAAGCT TCTTTGGCTA
TCATCAGTGC TGAAGGAGTT ATTGCTACAG CTACCGACCT GTCTGTATTG GCAGAAGCTA
CTGATGCTAT TTTCAGAGCT ACAGTTAACT TACAAGAACT TGCATGGGAC ATGAATGTCT
ACGATATCAG GCGGTTGGAT CGTGGAGGTA ACATTTTTTA CTTGGTGATC TTTGCTTTGA
CAGCTTTTTT TACCTGTTTC ATGTGCATTA AGTCAAGATA CCATTGGTAC AATGTTGCTT
TCTCCGGAGG GTTGTTATTG GAATTTATTG GGTTCCTCGG TAGAGTCTTG TCGTTTACTG
ATATGACAGA CAGCAACTTT TTCATCATGC AATTGGTCTG TTTAACAATT GCTCCAGCAT
TTCTTATGGG TGGAATTTAC TTTTTGTTTG CTCAATTGGT AGCTATCCAC GGCCGTAAAT
TTTCACTTCT TAAGCCCATG TGGTATTCTT ATTTGTTTAT TGGCTGTGAT ATTTTGTCGT
TAGTAATCCA GTCAGCGGGC GGTGCCCAAG CTTCCTATGC TAGTAACAAT GGTACCGATG
CAACACCAGG TACCAGAGTT ATGATTGCCG GTATCGGATT TCAAGTAGCT GCCATGTCCG
TGTTCATGGT ATTCTGGGGT TTCTTCCTTG TTAGATTGTA TTTCAAGAGA GACCATCGTC
ACAACGATGT CGAAGAGGTC GATGAAAAGA CTGCCGAAGT TGAGCCTGTG CTCCACAAGA
AGTCGTTCAA GAACTTTTTA ATTTTGCATT TGAATGGCAA GAAAGCTCAA CAATTCAAGA
GTTCTTACTT GGAGCAATTT TATAACCCCA GATACGCTGA AATCAGACAA AGAAAACTCT
ACAATTGGTT CCCCTTGGTT ATATCCGCGT CTGTTATCGT GATCTACATC AGATGTGTTT
ACAGAGTGGT TGAGTTGGCC CAAGGGTTCA GTGGATACTT GATTACTCAC GAAGTCTACC
TCTTTGTCCT TGACGCCATG ATGATTTCTA TCGTCGCTTT GTTGTTCATG GTGTTCCACC
CATACTTTGT ATTGGGACCT GAAGTTACAG TGACCGTCAA GTCGATCAAG AATAACGAGG
ATGAAGAGCC ACATCAGGAC TCATCTGAAG TCGAAGAAGA AGGAGTAGGA GTAGGAGAAG
GAGAAGGAGA AGTCACCGAG CCTAAAATTC AAGACCAGGA GGGGACCGTG ACCGTAACGG
TAAGCAACGA AGCCCTCAAC GATAAACAAG GGACACGAGA AGAAACTGCA ACACGAGAAG
ATACCCAAGA AGGTAGCTAC TCAGAACAGT CCTTAGAGAA TCCATTTCAG AAACCCACAG
AAAACTGGTA AATAGAAGGG CGCTTTAGTA GTTGTGTCAT TGACATTTGA CGGTATCTAC
TGTTTTCCTA TAACTATTCG CTAGAAGGTA TTTACTGACT ACTATGGTGT GCTATGGAAC
ATCCTAAACC ACCTACTCTT TGTTTTTTAC TAGTACTTTC AAATTAAATA TACACTACAA
ATCCGAA
|
|---|
| Protein sequence | MSQFFPDGLL TSLPTKTTLL SVNPTKSAAL LSKLTSATAA IATKHGKGGV QATRALIGAQ
ASLAIISAEG VIATATDSSV LAEATDAIFR ATVNLQELAW DMNVYDIRRL DRGGNIFYLV
IFALTAFFTC FMCIKSRYHW YNVAFSGGLL LEFIGFLGRV LSFTDMTDSN FFIMQLVCLT
IAPAFLMGGI YFLFAQLVAI HGRKFSLLKP MWYSYLFIGC DILSLVIQSA GGAQASYASN
NGTDATPGTR VMIAGIGFQV AAMSVFMVFW GFFLVRLYFK RDHRHNDVEE VDEKTAEVEP
VLHKKSFKNF LILHLNGKKA QQFKSSYLEQ FYNPRYAEIR QRKLYNWFPL VISASVIVIY
IRCVYRVVEL AQGFSGYLIT HEVYLFVLDA MMISIVALLF MVFHPYFVLG PEVTVTVKSI
KNNEDEEPHQ DSSEVEEEGV GVGEGEGEVT EPKIQDQEGT VTVTVSNEAL NDKQGTREET
ATREDTQEGS YSEQSLENPF QKPTENW
|
|---|
| |