| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_67737 |
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| Symbol | VPH3 |
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| ID | 4839578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 95757 |
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| End bp | 99632 |
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| Gene Length | 3876 bp |
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| Protein Length | 947 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640390893 |
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| Product | vacuolar ATPase V0 domain subunit a |
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| Protein accession | XP_001385041 |
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| Protein GI | 150865710 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1269] Archaeal/vacuolar-type H+-ATPase subunit I |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.508189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATCCAGCATC GCCTTTTTCG TAGCATTCTG GCAAAAGGCG TATTTAGTAC CGATTCGTTA
TTTTCAACAT TTTCACTAAA ATTGTTGTAT AATTGGCTCC TTTCCATTTC CAGATTTGTG
ACACAAGGGC TCCTATCAGT GATCGGATAG AAGAGAACTG AAATACTAGT TGAGTGCTTT
CTTTTCGCAG TTAGAGCGTC TGATTTCTCC CACACAGTGA TGCAGCCTAT TCAGCTATCT
GATGATCTGT CTTCTGTTGC TCCGGAGGCG ATTTTCCGGT CAGCCCCTAT GACGTTAGTG
CAGTTCTATG TGACAATAGA GTTGGCTAGA GATATGGTTT ATACTTTGGG GAATCTTGGC
GATGTCCATT TCCGAGACTT AAACTCCAAG TTGACACCAT TTCAGAGGAC ATTTGTGCTG
GAATTGCGTA ACATTGACAC CATGGAATCA CAGCTTGCAT TCCTCAATTC CATTATGATT
AAGTATGAAA CGATCAAGAG TGATGTGTTT GTCAATTTGA AGGCGGATAT GGACCCGCTT
CCTACTACGT CAGAGATGGA CGACATGAAA CAGAAAATCA CAACGTTTTA CGACAGAATA
AAGCACTTGG ATAACTCGTA CAACGTACTA AATGAACAGA AGATGGCAGT AGTGGAAAAC
AGACATGTGC TCAATGCTGT AACCGACTTC CACAGCAGCA GTCTTATAGG TGGATATAAC
GAGTCGCGTA TTTCTCTCTC TCTTTCTGAT GGTGCAGATG ATGATAATGT AGCACTTTTG
AATAACAGAA ACAACAGCAT GGAATTGGGT TCCGAAACAA TCAATCTTGA AGAGTCAGGT
TTCGATGCCA TTTCCGGGAC AATTGTAAGA GAAAAAGTAC CTCTTTTGAG AAACATCTTA
TGGAGAACCA TGAGAGGTAA CTTGTATTTC CATGACGTGC CAATAGATAA CGAGAAATTG
TTTGACTATA ATGCAACCCA GGAGGAGTTG GTCAACAAGA ACGTCTTTAT TGTGTATATA
CATGGAGATT TGTTGAGAAC ACGAGTGAGA AGAATCATCC AGTCCCTTGA TGGGAACATC
TTCGACAATG TCAACGGGGG AGCATCTGCC AGGGCAGCTA CCTCTTCTGA ATTAAATGCG
AAGATCACGG ATTTGAACAA TATTGTTATG ACCACCAAGA ACCATCTCAT TGCCGAGTTG
TTAATTTTTC AGGAGGCGTA CCCAGACTAT TGCTTTATAG TACAAAGGGA CAAGTTAATC
TACCAAACAC TCAACAAGTT CGATGAAGAC AGCACTAGAA GGTGCTTGGT AGGAGAAGGT
TGGATTCCCA CCTCTGACTT TGGACTTATT CGTCAAACAT TGAGACATCT CGTACGAGAA
AAGACTCGTC GTGGCGACGG AGAAAGTGAC TCTCAGGAAT CGGTTCCTTT AACTCAACAA
GGGTCATCTC CAAATCCCGT GAGCCAGACG TATACTAATC TTGGTAGTGG TAATTCATCG
TTATTTGCCA TTGATGATGC AACAGACGAT TTTTCAGAGT TGGAAGACGA AGAATATGGT
TCTTTGATCG CTATTGTCAA TGAACTTTCG ACTAACCGTA CCCCGCCTAC CTATCATAAT
GTAAACAAAT TCACTTCCGC TTTCCAGCTG ATTATAGACG CCTATGGTAT AGCCACGTAC
CAAGAAGTGA ATCCAGGATT GGCCACGATT GTAACATTTC CCTTTATGTT CGCCATCATG
TTTGGTGATA TCGGACATGG TTTGATAGTC TTGCTCATCA GTTTGTACCT TATCAAAAAT
GAGGTGCACT TTGGTGCCAT GAGGAATAAG GATGAAATTT TTGAAATGGC TTTCAATGGT
AGATACATCA TCTTGCTTAT GGGTCTTTTC TCCATGTACA CTGGATTTTT ATACAATGAT
ATCTTCTCTA AAACAATTAC CTTATTCAAA TCTGGCTGGG TATGGAATTT TCCTAAGGAT
TACGATTTTA CCAAAGACGG TCCGGTGACA TTGGTTGCTG AGAAGGCCGC ACGCACATAT
CCTATAGGTC TCGATTGGGC CTGGCACGGA GCTGAAAACA ACTTGTTGTT CACCAATTCA
TACAAAATGA AACTTTCTGT TTTGATGGGT TTTGTCCATA TGAACTACTC GTTGTTTTTT
AGTTTGGTCA ACTATAGATA TTTCAAGTCT AGGGTCGATA TCATCGGTAA CTTCATTCCT
GGTTTCTTAT TCATGCAGAG TATATTTGGT TATTTGTCTT TGACCATCGT CTACAAATGG
TCAGTAGACT GGTTAGGAAA AGGTAAGCAA CCTCCAGGTT TACTTAATAT GTTAATCAAT
ATGTTTTTGG CTCCAGGTAA AGTTGAAGAA CAATTGTACC CAGGTCAGAA GTATATTCAG
GTATTCTTGG TTCTTGTCGC ATTAGTTTGT GTTCCATGGA TTTTGGTGTA CAAACCTTTG
ACATTAAAAC GTCAAAATGA TAGAGCAATT CAATTGGGTT ACAAGGACTT ACACTCGCAA
GCCAACCATT CTATTCAACT ACACGAAGAA ATGGAAGCCA CGCAATTAGA AGAAGATTTG
AATCACGATC CCGATGATGA TGATTTTGAG ATTCTGGACG ATGATTTCCA TTTCCCAAAT
GATATTGAGC CTTTGCATCA TAATTCGACC TCCCATGGCG AAGACGGAAG CGATTTCAAT
TTTGGAGATA TAGTTATTCA TCAAGTAATT CACACAATTG AATTCTGTTT GAATTGTGTC
AGTCATACTG CTTCCTACTT GAGATTGTGG GCTTTATCTT TAGCTCATGC ACAACTTTCA
ACTGTGTTAT GGACAATGAC TATCCAAAAC GCATTTTATA CAACAGGCAA TGCAGGAATA
GCAATGGTTG TTGCGCTCTT TGGTCTTTGG TTTATATTGA CGGTGTGTAT CTTAGTTTTG
ATGGAAGGAA CATCGGCTAT GTTGCATTCG CTCAGATTAC ATTGGGTTGA GGCTATGTCC
AAGTTCTTTG AGGGCGAAGG CTATGCGTAC GAACCCTTTA CATTCAAATC AATTGATTTA
TAGAATTTCA AAGATTTCAA GTTATGGCAT ATAAAAGACC AACAGTCTTC AAATATATAC
AATGATTCAT ATGTTAAAGT TTCCACGATC TGCTCTCTCT TTCGATTGAA GCTATGACCC
ACAAAGCAAC CAAGCACATA GTGCTTGCAA CGAGTAGAAC ACCGTTGTAG ATCATGGGTT
TCTTAAAATC GTTCGGTTTC AAACCATGGT TAGCAATCAT CAATCCAGCA ATTGGCGAAC
CTAAGAAATT GCCAATGCCT CTACTGAAAT ACATTAATCC GCTCATAGCT TGATAATTGG
TAACTCCAAA CAACTCCACC AAGCATGTAG GTAATAAACT GATAATTGCA CCTGAAAAAA
CACCGTATAA TACAATAAAC GTTAGGAATG TATCTCTCGT TTCCACCATC CATAATGCAA
AAATCGTAAT AGCACTAAGG AAACTACAAA TGATAATCAT ATTGAGACGG CCAATCTTAT
CCCCGCCAAA TCCGAAGACA ACCTTGAACG CAGCATTAAT TGCGTTATTG ATACCAATAA
ACAAGGCGCC TTGGCTTCTG GTGAATCCCA AACTCTGGGC GTAGGAAGAC ATAAAAATCA
ATGGAATCAA GTACCCTGCC GATTGGAGCA TCGAGCCTAT AAGCTGTAGC CATACTTTCC
ATGAGCCTAG TTGTGCTACT TTGAACAACC TGTTGTTCGT CCTGAAGCTG GCGCTGGAAG
GTTCAACGAC AAGCATACTA GCGGTATACG TCAAGAATAA GTTCATGAAC CCCAAGGTCC
TAAGTGTCCA CTTATAGCCC ACTTGAACGA TGAGAT
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| Protein sequence | MQPIQLSDDS SSVAPEAIFR SAPMTLVQFY VTIELARDMV YTLGNLGDVH FRDLNSKLTP
FQRTFVSELR NIDTMESQLA FLNSIMIKYE TIKSDVFVNL KADMDPLPTT SEMDDMKQKI
TTFYDRIKHL DNSYNVLNEQ KMAVVENRHV LNAVTDFHSS SLIGGYNESR ISLSLSDGAD
DDNVALLNNR NNSMELGSET INLEESGFDA ISGTIVREKV PLLRNILWRT MRGNLYFHDV
PIDNEKLFDY NATQEELVNK NVFIVYIHGD LLRTRVRRII QSLDGNIFDN VNGGASARAA
TSSELNAKIT DLNNIVMTTK NHLIAELLIF QEAYPDYCFI VQRDKLIYQT LNKFDEDSTR
RCLVGEGWIP TSDFGLIRQT LRHLVREKTR RGDGESDSQE SVPLTQQGSS PNPVSQTYTN
LGSGNSSLFA IDDATDDFSE LEDEEYGSLI AIVNELSTNR TPPTYHNVNK FTSAFQSIID
AYGIATYQEV NPGLATIVTF PFMFAIMFGD IGHGLIVLLI SLYLIKNEVH FGAMRNKDEI
FEMAFNGRYI ILLMGLFSMY TGFLYNDIFS KTITLFKSGW VWNFPKDYDF TKDGPVTLVA
EKAARTYPIG LDWAWHGAEN NLLFTNSYKM KLSVLMGFVH MNYSLFFSLV NYRYFKSRVD
IIGNFIPGFL FMQSIFGYLS LTIVYKWSVD WLGKGKQPPG LLNMLINMFL APGKVEEQLY
PGQKYIQVFL VLVALVCVPW ILVYKPLTLK RQNDRAIQLG YKDLHSQANH SIQLHEEMEA
TQLEEDLNHD PDDDDFEISD DDFHFPNDIE PLHHNSTSHG EDGSDFNFGD IVIHQVIHTI
EFCLNCVSHT ASYLRLWALS LAHAQLSTVL WTMTIQNAFY TTGNAGIAMV VALFGLWFIL
TVCILVLMEG TSAMLHSLRL HWVEAMSKFF EGEGYAYEPF TFKSIDL
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