| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_61124 |
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| Symbol | HRD3 |
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| ID | 4839063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 100351 |
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| End bp | 102753 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640390378 |
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| Product | protein responsible for ER-associated degradation (ERAD) of numerous ER-resident proteins |
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| Protein accession | XP_001384673 |
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| Protein GI | 150865451 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAC ACTATATTGC CCATATTTTC ATACTATCTT TTGCAATAGC AACTCTGTTC
GAGTCTGGTT ACTACCGACA AGCTTTAAGA TATCTAGCGG AAATTCCTGA CGATTCATAC
CGAGGATCGC CGTTGTACAA TAACGACAAT ATCGACGACA ACTTATATAT ACCCAATTAT
AACTCCACAC TCAAGGATTA CGATGGCAGG CAAATACGGC ACGTACCAGA GATTATTACC
AAGAAAGTTT TGCCACTATT AGAGACTGCA GCTGCGGAAA ATGACCAAAT GGCCATGATA
ACATTGGCTG ACATCTATAC GTTTGGCAAT TACTCTGTAA CTGTAGATTA TCCCAAGGCA
TTGCAGTACT ATCATAAGGC TGTAGAAAAT ACCGGAAACG GTCATGCGTA TTTCATGCTT
GGATTTATGT ATTCAACGGG TATGTTCGGA GAAATAGATG CTGACGATTC TAAAGCTATA
ATGTACTATC AGTTTGGCAT GGAAAACGGC GACCTGAACT CTATCATGGC TTTAGCGTAT
CGTCATTACT ACGGAATAGG GACTCCGGAG AATTGCGAAC TTGCAATGCA CTATTACTCG
CGATTGGCTC ATTTTGGCTA TGATATGATA CAGAAGAACA TAGGTGATGT AGACAAAGGT
TTGCGCTACA ACATCAAGAT CGTAGATTTC AACGGTGGGC TCTATGGGAA CAAACTCAGC
GAATCGGCCA ATTCTATTTT CTCCCGGACG AGAAGGCACA ATAAAGACAA GGAAGAGTTT
CTTGAATTCT TCGATATCGA CGATCACCAG TACATCAACT TCTATCAGAA TGCTATAACC
CATTACTCTG GTGATTATTT TCTTCCAAAA AACTATACAA GGGCATTCGA GTACATTCAA
GACTGTGTAG GTTTGGGTGA ACAGATGTAC GGCTCCCTGA ATTATCATAG AATAAATGAG
ATAGACAGCA CCTTTCTCAG TCACTGTCAA GCTCTTTTGG GCCACATGTA TCTAACTGGT
GAAGGAGTAC CGAAGAATTA TGATAAAGCA ATGAAATGGT TACGTAATTC CATTGTAGTA
GCACGAAACT CAGAAGCCTT GATTGACCTA GGCGAAGTGT ACGAGAATGG ATTAGGTAAC
GAATCTATCA ACACTTCCAT GGCTTTGAGT ATCTACCGGG AAGCAGGTGA AACTTCAGCA
TTAGGAAAAT TAAAGCAGGC CAAGTTGCTA ATGCTGATGA GTCCAGAAAA TGACCCTAGG
AAAGGGAAGT TCGCCAAGGA CATATACTCC AGTATCAAAA AGGCTACTTT CAGTGGAAGC
ACCGAAGGTT TATACTACTT CACCGAGTTC TTACAATCTG GACTAGCCTC GCAAATAGAA
CCTGAGAGAG CCGTCACTTG TCCAGGAACC ACTATTTGCT ATAAGGTCTT CGTTGAAAAA
TTGGAGCATA TATTCTTGCC TCAGTTATCT TATGCTTTCG AAGAGTTGAT ATATGGAAAC
TTTAAGAATG CCCTCCTCGG CTACCTGATG GCAGCTGAAC AAGGATTGGA AAACGCACAA
ATATCAACTG CCTACTTGCT CTACCAATTA CAACCAATTC TATCTACTCG AGCTGAAAAA
TCATTTGATC ATGAAAGAGT TTCTGCTTCT GTCCGATACC TTGAAAGAGC TTCTCAACAA
GATAACGTAG ATGCTACCCT TCTCTTGGGG GATATGTTCT TGAACGGATT ACACAACACG
TTAGAGAAAG ATAATGATAG AGCTTTCAAT TACTATATGA GGGCAGCTGT ATCCTTAAAA
TCATCGTATG GTGCCTATAA AGTAGGTAAT ATGTATGAGT ATGGATTGGG TCCAGTCAAT
GATTCGGTTG ATTACTTCAT GGCCAAACGT TACTACGACT TGAGTATTGA TATTAAGAAG
AATTTGGAAG ATAAGACTAG CAAGCTGAGT AACAAGACCC CAATTAATTG GGCCCTCTTG
AGATTGAGAT TGAAGTATGT GTTTAACCGA AAGCAATTCA AGAATCAAGA GGAATCTTCT
GGGTCTTCAG GTTGGTTCAA TGCATTTAAG AAAATCAGCA ATGCAGGTAA ACAGGCAAAT
GAAGGTACTG ATAGAGCGAG TGACCGAGCA AGAGCTCATC ACGAAGGAGG TGATTTCTTG
AGGGATGACG AATTTGAAGA GTACGATATT GGTGATTATC TTGTGATCTT CCTTACATTC
ATGTTCTTTG TCGTCTTCTT TATTCAGAAT GTTATCCGCC AGGCACGCAG AATGCGACAA
GGAAACAATG TTCCAAATGA AGAGCAACAG AATCAAAATG GCTGGAACTT TCGATTCAAT
TTCAATGGAA TCGGTGCAGC AGCAAGGGCA GGAAACTTCG AATTTCACTT TTTTGCAATT
TAG
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| Protein sequence | MKIHYIAHIF ILSFAIATSF ESGYYRQALR YLAEIPDDSY RGSPLYNNDN IDDNLYIPNY
NSTLKDYDGR QIRHVPEIIT KKVLPLLETA AAENDQMAMI TLADIYTFGN YSVTVDYPKA
LQYYHKAVEN TGNGHAYFML GFMYSTGMFG EIDADDSKAI MYYQFGMENG DSNSIMALAY
RHYYGIGTPE NCELAMHYYS RLAHFGYDMI QKNIGDVDKG LRYNIKIVDF NGGLYGNKLS
ESANSIFSRT RRHNKDKEEF LEFFDIDDHQ YINFYQNAIT HYSGDYFLPK NYTRAFEYIQ
DCVGLGEQMY GSSNYHRINE IDSTFLSHCQ ALLGHMYLTG EGVPKNYDKA MKWLRNSIVV
ARNSEALIDL GEVYENGLGN ESINTSMALS IYREAGETSA LGKLKQAKLL MSMSPENDPR
KGKFAKDIYS SIKKATFSGS TEGLYYFTEF LQSGLASQIE PERAVTCPGT TICYKVFVEK
LEHIFLPQLS YAFEELIYGN FKNALLGYSM AAEQGLENAQ ISTAYLLYQL QPILSTRAEK
SFDHERVSAS VRYLERASQQ DNVDATLLLG DMFLNGLHNT LEKDNDRAFN YYMRAAVSLK
SSYGAYKVGN MYEYGLGPVN DSVDYFMAKR YYDLSIDIKK NLEDKTSKSS NKTPINWALL
RLRLKYVFNR KQFKNQEESS GSSGWFNAFK KISNAGKQAN EGTDRASDRA RAHHEGGDFL
RDDEFEEYDI GDYLVIFLTF MFFVVFFIQN VIRQARRMRQ GNNVPNEEQQ NQNGWNFRFN
FNGIGAAARA GNFEFHFFAI
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