| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_60393 |
|---|
| Symbol | SPF1 |
|---|
| ID | 4839534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | - |
|---|
| Start bp | 1099474 |
|---|
| End bp | 1103115 |
|---|
| Gene Length | 3642 bp |
|---|
| Protein Length | 1209 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640390849 |
|---|
| Product | P-type ATPase |
|---|
| Protein accession | XP_001385220 |
|---|
| Protein GI | 150865839 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0474] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01657] P-type ATPase of unknown pump specificity (type V) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0027505 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCA TTGTTGACAA CTCCGCTATA GCTGGGGCTG AGTTGTTGGT TCCCAAGCTG
TTTTTATTCC GTCCCTATGT GTGGCCATTC ACCATAGTGT ATCCAGTTTT CCTTGAGATC
TACTTTAACC ACTACGACAA GTATGTTGTA GGGGCCGAAT GGACGTTTGT GTATTTGATC
ACGATCATTT CTGTTAACAT GCTCTTCTGG TTGATGCCCC ATTGGAACAT CAACATTGAC
TCTCGTTTCA ACTACTCTCC TGTGAAGACG ATTGCTGAAG CCAGTCATAT CAAAATCACC
CCTGCCCCAA ACCTGGGAGT TGGCGAAATC TGTTCAATTT CTAGAGAAAC ATTCCATGAT
GGTGAAAAGC AGGTGTCGTT TTTGTACCAG AAACGTCGCC ACTTGTTCCA TACCGAAACC
CAGAAGTTTT CGCCTCCTGC TTTCCTCTTC GACGAAGAGC CTGAATTGGC CAAGTTCCAG
AACTCCACAG GGTTACTGGG AGACTTGGAG AAGCTTTTGA GAAACTACGG TGAAAACAAG
TTCGATATTC CTGTCCCTAC GTTCTTGGAG TTGTTCAAGG AACATGCCGT TGCTCCTTTC
TTTGTGTTCC AGATATTCTG TGTAGCTCTT TGGTGTATGG ATGAGCAGTG GTACTACTCG
TTATTCTCGC TCTTTATGCT TGTTTCGTTC GAGATGACTA CCGTCTTCCA GAGAAGAACG
ACCATGGCTG AGTTCCAGAG TATGGGTATC AAGCCTTACA CTATCTACAC TTACAGAAGT
GAAAAGTGGA AACAATTGAA GACCACCGAA TTGCTTCCTG GCGATTTGGT TTCTGTCACC
AGAACTAGCG ATGACTCTGC ACTTCCCTGT GATTTACTCT TGACTGACGG TAGTGCAATT
GTTAACGAAG CCATGTTGTC TGGTGAGTCT ACACCTTTGT TGAAGGAGTC GATTAAGTTG
AGACCTAGCG GTGAAAAGTT GCAGCCAGAT GGCTTTGACA AGAACTCGAT TTTGCATGGT
GGTACATCGG CTTTGCAAGT GACCAAGCCG GAAAACCCCA TCGTTCCTAT TGCTCCCGAT
AACGGAGCTC TTGCGTATGT GACCAAGACA GGATTTGAAA CTTCGCAAGG TTCTTTGGTT
CGTATGATGA TCTTCTCCAG TGAAAGAGTT TCTGTGGGCA ACAAAGAGGC ATTACTCTTC
ATCTTGTTCT TGTTGCAATT CGCTATAGCT GCCTCGTGGT ACGTTTGGGT CGAAGGAACG
AGGATGGGTA GAACCCAAGC CAAGTTAATC TTAGACTGTA TCATTATTAT TACGTCCGTA
GTTCCTCCTG AGTTGCCTAT GGAATTGACT ATGGCTGTGA ACTCGTCTTT GGCTGCTTTA
CAAAAGTACT ATGTTTACTG TACTGAACCT TTCAGAATTC CTTTGGCCGG TAGAATCGAT
GTCTGTTGTT TCGACAAGAC CGGAACCTTG ACTGCAGAAG ATCTTGTGTT TGAAGGTTTA
GCTGGTTTCA ACCTCAACGA CATCCACCAC TTGTTCAAGT GCGAAGACGC CCCTGAAACG
ACTTCTCTTG TCTTGGGTTC GGCTCATGCT TTAGTTAGAC TTGATGATGG TGACATTGTA
GGTGATCCAA TGGAACAAGC CACCTTGAAG GCCGCCCATT GGAACGTCGG AAATAACGAT
ACTGTAGAAA GAGACATTGG AAAAGGCAAG TCGGAAAAGA TCAAGATCTT GCGTCGTTTC
CAATTCTCAT CCGCCTTGAA AAGATCCTCG GCTATCTCCT CCATTAATAC CGTCCCTGGT
AAGAACTTTG TAGCCGCTAA GGGTGCTCCA GAGACAATCC GCAATATGAT TATTGATGCT
CCAGAGAACT ATGAAGATAT CTACAAGTCG TTCACCAGAT CTGGTTCTCG TGTGCTAGCT
TTGGCTTATA AGTACCTTGA TGCTAACGTC AATGTGAATA AGGTTGCCAG AGAAGAAATC
GAGTCCAAGT TGCACTTTGC TGGGTTTATT GTTTTCCACT GTCCTTTGAA AGACGATGCT
GTGGAAACAA TCAAGATGTT AAACGAATCC TCTCACCGTT CTGTTATGAT CACTGGTGAC
AATCCTTTGA CTGCTTGTCA CGTTGCTAAG CAGGTGGCTA TCACCACTAA GGACGTGTTG
ATCTTGGATG CTCCGGAGGA GCACCATGAT GTTACTGATG AGCAGAATTT GGTCTGGAGA
AACGTCACTG AATCTATTGT TATTCCTTTC AAGTCTTCCG ATGAAATCAA CACCGAGTTG
TTCAAGAAGT ACGATGTCTG TATCACTGGT TATGCGTTGG GCTACTTGGC TGACCACGAG
CAAATTTTGG ACTTGTTGAA GCACACTTGG GTTTATGCTA GAGTTTCACC AAACCAGAAG
GAGTTCATCT TGACATCGTT GAAGGAAGCT GGCTACAACA CCTTGATGTG TGGTGACGGA
ACCAATGATG TGGGTGCTTT AAAACAAGCC CACATTGGTG TCGCTTTGTT GAACGGTACT
GAAGACGGCT TGAAGAAGAT TGCTGAAAAC AGAAAGATCG AAGCCATGAC TAGAGTCTAT
GAAAAGCAAG TGGAGATTTT CACCAACTGG GGTAAGAACC CACCTCCAGT TCCACCTCAA
CTTGCCCATG TCTATCCACC TGGACCAAAC AATCCAAAAT ATTTGGAAGC CTTGCAAAAG
AGAGGTGTGG AAATTACAGA TGAAATGAGA CGTGCTGTGG CCATTGCTAA CAGGGGTGGT
CTTCCCAAGA TCAAAGCTAA GGAAGGAAAG CAAAGTGCCT CTAGTATTGC TGACTCTTTG
ATGGCTTCAC TTAATGATCC AGAAGGTGAA GACGAAGCTC CAGTCTTGAA GTTGGGAGAT
GCTTCTGTTG CTGCGCCTTT CACTTCCAAG TTGGCTAATG TGTCTACTGT TACAAACATT
ATTCGTCAAG GTCGTTGTGC CTTGGTTTCC ACCATTCAAA TGTACAAGAT CTTAGCCTTG
AACTGTTTGA TTTCTGCCTA CTCTCTTTCC GTGTTGTACT TGGCTGGAAT CAAGTTTGGT
GATGCTCAAT CCACCATCTC TGGTATTTTA TTGTCTATTT GCTTCTTGTC GATTTCCCGT
GGTAGGCCAA TTGAGAAGTT GTCAAAAGAA AGACCACAGG ACGGTATCTT TAACAAGTAC
ATCATGGGTT CTATCTTGGG TCAATTCGCA ATTCACATTG TCACGTTGAT CTACATTACC
AGAGAAATCT ATATTAATGA ACCAAGAGAA CCCCAGATTG ACTTGGAAAA GGAATTCTCT
CCATCATTGT TGAACACCGG TATGTTCTTG TTGCAGTTGG CTCAACAGGT GTCCACCTTT
GCTGTCAACT ACATTGGCTT GCCATTCAGG GAAAGCATTA AAGACAACAA GGGTATGTAC
TATGGTTTGT TGGGTGTTTC ATTCTTGACT CTTGCTGGAT CCACTGAATT AATGCCAGAG
TTGAACGAAG CCATGAAGTT TGTCAAGATG AGCACAGACT TCAAAATCAA GTTGACAGGG
TCAATTTTGA TTGATTTGTC CTTCACCTGG GCCATAGAAG TGGTATTGAA GCACTACTTC
ATGAATTCCG GTCCGGCTGA CATTGCTATT AGAGATGATT AG
|
|---|
| Protein sequence | MSSIVDNSAI AGAELLVPKS FLFRPYVWPF TIVYPVFLEI YFNHYDKYVV GAEWTFVYLI
TIISVNMLFW LMPHWNINID SRFNYSPVKT IAEASHIKIT PAPNSGVGEI CSISRETFHD
GEKQVSFLYQ KRRHLFHTET QKFSPPAFLF DEEPELAKFQ NSTGLSGDLE KLLRNYGENK
FDIPVPTFLE LFKEHAVAPF FVFQIFCVAL WCMDEQWYYS LFSLFMLVSF EMTTVFQRRT
TMAEFQSMGI KPYTIYTYRS EKWKQLKTTE LLPGDLVSVT RTSDDSALPC DLLLTDGSAI
VNEAMLSGES TPLLKESIKL RPSGEKLQPD GFDKNSILHG GTSALQVTKP ENPIVPIAPD
NGALAYVTKT GFETSQGSLV RMMIFSSERV SVGNKEALLF ILFLLQFAIA ASWYVWVEGT
RMGRTQAKLI LDCIIIITSV VPPELPMELT MAVNSSLAAL QKYYVYCTEP FRIPLAGRID
VCCFDKTGTL TAEDLVFEGL AGFNLNDIHH LFKCEDAPET TSLVLGSAHA LVRLDDGDIV
GDPMEQATLK AAHWNVGNND TVERDIGKGK SEKIKILRRF QFSSALKRSS AISSINTVPG
KNFVAAKGAP ETIRNMIIDA PENYEDIYKS FTRSGSRVLA LAYKYLDANV NVNKVAREEI
ESKLHFAGFI VFHCPLKDDA VETIKMLNES SHRSVMITGD NPLTACHVAK QVAITTKDVL
ILDAPEEHHD QNLVWRNVTE SIVIPFKSSD EINTELFKKY DVCITGYALG YLADHEQILD
LLKHTWVYAR VSPNQKEFIL TSLKEAGYNT LMCGDGTNDV GALKQAHIGV ALLNGTEDGL
KKIAENRKIE AMTRVYEKQV EIFTNWGKNP PPVPPQLAHV YPPGPNNPKY LEALQKRGVE
ITDEMRRAVA IANRGGLPKI KAKEGKQSAS SIADSLMASL NDPEGEDEAP VLKLGDASVA
APFTSKLANV STVTNIIRQG RCALVSTIQM YKILALNCLI SAYSLSVLYL AGIKFGDAQS
TISGILLSIC FLSISRGRPI EKLSKERPQD GIFNKYIMGS ILGQFAIHIV TLIYITREIY
INEPREPQID LEKEFSPSLL NTGMFLLQLA QQVSTFAVNY IGLPFRESIK DNKGMYYGLL
GVSFLTLAGS TELMPELNEA MKFVKMSTDF KIKLTGSILI DLSFTWAIEV VLKHYFMNSG
PADIAIRDD
|
|---|
| |