| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_60166 |
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| Symbol | |
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| ID | 4839443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 1358978 |
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| End bp | 1360672 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640390758 |
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| Product | predicted protein |
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| Protein accession | XP_001385266 |
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| Protein GI | 150865875 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1948] ERCC4-type nuclease |
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| TIGRFAM ID | [TIGR00596] DNA repair protein (rad1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000965923 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACACA GCGTAGGCTC AGATTCTGAA GAGTATCTTC TTGAAGAATT GCCTAAGTGG
CACGAACTTG GAAACATGTT GGATGACATA TTCCACGAGA AGTCACTATC ATCAGAGAAT
CTGGGTCCTA TACTCATTAT GTGCTCGGAT ACTCGTACAG CTCGTCAGTT GTACCAGGTG
ATAGAATCAA TGAAAGAGAT TAAAGTAAGC GGTAAGAAAT ACTTCAGTTC CAGAAGATTT
ATGATTCTGA AGTTGCATGA GTATCTCCAA TGGAAGGAGA TCAACAACTT GTCTAAACAG
CTTAACGAAG ATTTGGAGAA ATCTGAAGAC CAGACCGAAG AACAGATTAT TACGTCTAAA
TCATTTACCA GAAATGGACA ACCAGCTAGC AAAAGACGAA GAACTCGTGG AGCTTCTTCC
ACAGCAAGAG TTGCCAAACT ATACTCCGGG GAAAACAGAG GGGCTGTCGA TATTGATGAA
AATGTATTAG GTCAAATGGA CCAAGAAATC GTAGAGTCAG AGGAAGACGA TGTCGTGGAA
ACAGGACCTA CTGGTTTATT TGTCGAAACT GAAGACATCA TCGTGCCTTC GTTAAGTCAT
ATCAATATGG GTGATCAGGT AATAATCCAA GTCTACGACG AAGGCAGAAA CGATGCTTTA
CTTCAGGAAA TTTCGCCTTC ATACATAATA ATGTATGAAC CAAACTTGTC ATTCATACGG
CGTACAGAAA TCTTTCAAGC CATAAACAGG GACCAGCCTG CGAAGGTCTT TGTAATGTTT
TACAGCAACT CCACAGAAGA ACAAAAGTAT TTGCTTCGAT TGAAGAAGGA GAAAGATGCA
TTTACTAAGT TAATCAGAGA AAAGGCATCG TTGAGTAAAC ATTTCGAGAC GAGTGAAGAT
AACTATAAAT TCCAAATTCA GAGAAATCAA ACGATGAACA CTAGGATAGC AGGAGGGGCT
TCGTTCAGAA CGACCGATGA AATGAGAATC GTCGTGGACT CAAGAGAATT TGGTGCTCTG
CTACCAAATT TGTTGTACAG AATTGGAATC AAAGTTGTTC CATGTATGCT TACAGTTGGC
GATTATGTCA TTTCTCCTAA GATTTGCGTA GAGAGAAAGG CAATTCCAGA TTTGGTTTCT
AGTTTTAAAT CTGGAAGATT ATTTACTCAG TGTTCTCAGA TGTTCAAGCA TTATGAGACA
CCTACGTTGC TAATCGAATT CGACGAGAAC AAGTCATTTT CTTTGCAGCA GTACGCTGAT
TCCCGGTTTT TAAAAGGAAG AGCAGAAACA GCCAACGATT CGCCCATCAA CCAACTGTTG
CAGTCTAAGA TTATGGAGTT GTTGGTTGCA TATCCCAAGT TGAAAATCAT ATGGTCGTCT
TCTCCGTATG AGACAGCACA GATATTCATG TCGTTGAAAG CCAATCAGGA GGAGCCAGAT
GTAGAATCAG CTTTGAATAA AGGTGTCAGC AAAGAAGTCA TAACTGAAGA TGGAGGGCCA
CCAAACTTTA ATGACGACCC GATCGACTTC ATACAAAACA TCCCAGGCAT AAACGATATG
AATTACTATA AGATTATCCA AAATGTCAGG AATTTAGAAG AGTTGGTTCA GCTCTCAAAG
GAGCAGTTTG TGAAGTTGCT TGGAAAAGAA AACGGAAAGA AGGCTTATAA CTTTATCAAC
CATAGAATTA AGTAG
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| Protein sequence | MKHSVGSDSE EYLLEELPKW HELGNMLDDI FHEKSLSSEN SGPILIMCSD TRTARQLYQV
IESMKEIKVS GKKYFSSRRF MISKLHEYLQ WKEINNLSKQ LNEDLEKSED QTEEQIITSK
SFTRNGQPAS KRRRTRGASS TARVAKLYSG ENRGAVDIDE NVLGQMDQEI VESEEDDVVE
TGPTGLFVET EDIIVPSLSH INMGDQVIIQ VYDEGRNDAL LQEISPSYII MYEPNLSFIR
RTEIFQAINR DQPAKVFVMF YSNSTEEQKY LLRLKKEKDA FTKLIREKAS LSKHFETSED
NYKFQIQRNQ TMNTRIAGGA SFRTTDEMRI VVDSREFGAS LPNLLYRIGI KVVPCMLTVG
DYVISPKICV ERKAIPDLVS SFKSGRLFTQ CSQMFKHYET PTLLIEFDEN KSFSLQQYAD
SRFLKGRAET ANDSPINQSL QSKIMELLVA YPKLKIIWSS SPYETAQIFM SLKANQEEPD
VESALNKGVS KEVITEDGGP PNFNDDPIDF IQNIPGINDM NYYKIIQNVR NLEELVQLSK
EQFVKLLGKE NGKKAYNFIN HRIK
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