| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_60062 |
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| Symbol | MDR19 |
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| ID | 4839057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 59734 |
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| End bp | 61467 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640390372 |
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| Product | spermidine exporter, MDR-type pump |
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| Protein accession | XP_001385036 |
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| Protein GI | 150865707 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.105172 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TCTAGGCAAA CCAGTCGTTA TACTGTTCGT GATATATATG GCGATATGGA CGAAGAGCAT
ATCGATTTGG AGAGAACGAA AAGTAGGTCG ACCATCTTGA CTACTCTAAC AGCTCGTGTT
CAAACTGTAC AGCACGAGAT GCATTCGCCC TATCGCATTG AAGATGTTGA AGCTAAAATA
GATACGGAAA TTGAGAACTT CTACGAGAAA ACACCAGATA TTGCAGTGCC TGTAAAGGAC
TTTGGTGGAG AGTTCAATTC TATAGATCCA GAATTAGTCA CTTGGGAGGG AAAGGAAGAC
CCTATGTACC CTCGTAATTG GTCTCGACCA GAAAAGATGT TCCAACTCTT TATAGTAGGG
TTGTATACCT TGATCTCACC CATGTCGTCC ACTATGCTAT CACCAGCAAT GACTAAAATC
GCAGAAGAAT TACATATGGA AGGTGATTTT ATAGTATCTT TCACTGTTTC TGTCATGGTG
CTAGCTTGGG CTCTTGGACC GTTGTTAATT GCTCCACTTT CAGAAAGTGA TCGTTTTGGT
AGAAGAACTG TGCTCAATGT TTCCATTTGG TTAATCTTTA TTTTCAACTT AGCGTGTGCA
TTTGCAAAGA CTACCGCACA ATTGTGTATC TTCAGATTTC TCGGCGGTCT TGGAGGATGT
GCAGCTTTGA ATGTTGGAGC TGGTACTCTT GCAGATCTCT TCAGTGACGA CGAGAGGCAA
ATAGCCATGG CCATTTACGG GATGTGCCCT TCGCTTGGAC CGGTAATTGC TCCAATTATT
GGAGGGTTTA TAATTTCTCA TAAAGAGTGG CCATGGGTCT TCTATGTTCT TGCCATGTTT
AATGGAGCTG TTGCCGTATT TGGAACAATC TTTTTTAAGG AAACTTATTC GCCGAAGTTG
TTAAGAAAGA AGGCTATTAA ATTGAGAAAG GAAACTGGCA ATGAACATCT ACACACTATT
TTCGAAATCG CTGATGGTCA GAGAATGTGG GAGAAAGTTG CTGTAACCAT GAGTAGACCA
TTGAAATTGT TGTTCACCCA TCCCATGGTC ATTGGTTTAG GTTCGTTCAT GGCTTTCGTA
TATGGTTTCA TGTATCTTAT GATCGTGACA TTTCCGGATG TTTTTGGTGT ATCCTACGGG
TTCTCAGTTG AGGTTGCCGG TCTCATGTTT ATTCCATTGG GAATCGGATT TACTCTAGGA
GTGATATTTT GGTCTTTAAT GATAGACAAG ATATACTATA GGTTGATAGC CAAAAACGGT
GGTGTTGCAA AGCCAGAGTA CAGGTTGCCA TGTCTCTGTT TCAGTGGGAT TGGGGTGCCG
GTTGGCCTAA TTTGGTATGG ATGGTCTGTC CAAAATAAAC TTCATTGGAT TATGCCACTG
ATTGGGATGG GCATATTCGC ATTTTCCATA ATTGCTGTAT TCCAAACTAT CCAGAACTAC
TTGATTGATA TGAACAATCG GTTTGCAGCC AGTTCTGTTG CAGCAGCAGC TGTGTTTCGT
TCGTTGTTTG GGTTTTCATT TCCATTGTTT GCCCAGAAGT TGTACGATAG GCTACACTAC
GGATGGGGGA ATACCCTTTG TGCTTTCATT GCCTTGGCCT TGGGCTTGCC ATTCCCTATC
TTTTGTTTAA TGTATGGAGA AAGATTGAGA CTATGGGCTA ACAGGAGAAT GGATAGAGAC
CAGGCGAAAA GAGATGCAAG GAATCTTGAG AGGTTACAGA AAAGAAATTC TTAG
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| Protein sequence | SRQTSRYTVR DIYGDMDEEH IDLERTKSRS TILTTLTARV QTVQHEMHSP YRIEDVEAKI
DTEIENFYEK TPDIAVPVKD FGGEFNSIDP ELVTWEGKED PMYPRNWSRP EKMFQLFIVG
LYTLISPMSS TMLSPAMTKI AEELHMEGDF IVSFTVSVMV LAWALGPLLI APLSESDRFG
RRTVLNVSIW LIFIFNLACA FAKTTAQLCI FRFLGGLGGC AALNVGAGTL ADLFSDDERQ
IAMAIYGMCP SLGPVIAPII GGFIISHKEW PWVFYVLAMF NGAVAVFGTI FFKETYSPKL
LRKKAIKLRK ETGNEHLHTI FEIADGQRMW EKVAVTMSRP LKLLFTHPMV IGLGSFMAFV
YGFMYLMIVT FPDVFGVSYG FSVEVAGLMF IPLGIGFTLG VIFWSLMIDK IYYRLIAKNG
GVAKPEYRLP CLCFSGIGVP VGLIWYGWSV QNKLHWIMPS IGMGIFAFSI IAVFQTIQNY
LIDMNNRFAA SSVAAAAVFR SLFGFSFPLF AQKLYDRLHY GWGNTLCAFI ALALGLPFPI
FCLMYGERLR LWANRRMDRD QAKRDARNLE RLQKRNS
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