Gene PICST_47506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_47506 
Symbol 
ID4839108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009045 
Strand
Start bp805891 
End bp806772 
Gene Length882 bp 
Protein Length293 aa 
Translation table12 
GC content45% 
IMG OID640390423 
Productpredicted protein 
Protein accessionXP_001384817 
Protein GI150865552 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0187583 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.27558 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAGCG CTTTGCCCCA CAAATACCAC GACGAAATCG AAGCCCAAGG CTTCACAGTG 
ATCCGAGAAT TCCTTACCCC GGACGAGATT GCCAAATATA GAGCTGCGGC TGAAGTTGTA
ATCCAATATG CCCGTGAAGG CAACTATCCC TATGTTAGAA CAAGAGGCAA ACAGTTTCCG
CCATGGCCAA AGAATTTCAG TCCCGACATC TGGGGAGTCA GTGGTCTCTT GCACCCAGAC
TTGGGTGAAA AATCTACTCC CTTTCACGAA TGCTATGCCA GTGAAAAGAT GTTGGCTGTC
GTTGGTGACA TTTTGCAAGT TGGCAAAGAG GGTTTGTCTA TGGAGTTATT CAACATGTTG
ATCAACCCCT TAACAGACTT CGGGTTGGAC TGGCACAGAG ACACGATCAA ACCGGAAGCC
TCTGAACAGG AAGAAGCTCA GCAGTTGCTA GAGGAACCTT ATGCTGGAAC GCAGTTCAAT
TTGGCTCTCA CTGACGATAA GTGTCTTATC GTTATTCCAG GATCTCACAA GCGAGTCAGA
ACTTCGGAAG AAAGAGAAAA GACTCTGAAT GATAACAAAA AGGAATTCAT AACCAATCAA
TTGATTGTAG AATTGAACCC GGGTGATCTT GTATTCTACA ATAACAATAT TCTTCACCGA
GCCGAATATT CTTGCAAGAG TACCAGAGTG ACTTTGCACG GATCATATGG CCATGTTGAC
CATGGCAGAT CTAGGGCAAA GGGGATCTTG CAACATGGTG TTGCTGAATG GTTGCCTCGC
TTCGAACCCA AAGAAGGAAA CATGGCGATG TTAAAAGAAA AGTTGGTTAA ACTTGCAAAG
GAGTTTGAAT CTGTTGATCT CGGATATGCT CTTGAAGGGT AG
 
Protein sequence
MPSALPHKYH DEIEAQGFTV IREFLTPDEI AKYRAAAEVV IQYAREGNYP YVRTRGKQFP 
PWPKNFSPDI WGVSGLLHPD LGEKSTPFHE CYASEKMLAV VGDILQVGKE GLSMELFNML
INPLTDFGLD WHRDTIKPEA SEQEEAQQLL EEPYAGTQFN LALTDDKCLI VIPGSHKRVR
TSEEREKTSN DNKKEFITNQ LIVELNPGDL VFYNNNILHR AEYSCKSTRV TLHGSYGHVD
HGRSRAKGIL QHGVAEWLPR FEPKEGNMAM LKEKLVKLAK EFESVDLGYA LEG