Gene PICST_47482 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_47482 
Symbol 
ID4839607 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009045 
Strand
Start bp265804 
End bp266770 
Gene Length967 bp 
Protein Length151 aa 
Translation table12 
GC content42% 
IMG OID640390922 
Productpredicted protein 
Protein accessionXP_001384709 
Protein GI126136371 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0184] Ribosomal protein S15P/S13E 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.202257 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCGTA TGCATTCATC TGTATGTGAA TATAACAGCG AACATGGACG GCATTATCAG 
TTGCAAAATA CTTGAATAAA ACGGAATGGA TCGATTCGGT TTTCACGAAG TATAGCATAA
AGACAAGGTC TAGTCAAGAG TGGTAGTCCA ACTTCATAGT TCTCATAAGA ATCTAGTTCT
TATTCGAGAT ACTCGGACTA CTGCAAGCTC TTGGTCCTGA TACTCTGTCT TGCTTTCGTG
GAGTTATGAC TGGTCGATAC CTTTTATTAA AGTGTAGTCA GAGGTCTAGT GTTGGAAATG
TTCAGTGGAA GATTCTTGGA ATTGATAAAG AGCTTGTGGA CTTGCACATC TGACTGTTAC
ATTTGAGACT CGTATAGTGG TGAACACTTC GAGTTTCAAT GTTGGCAGAA GTTGTAATAT
CACTGTTGTT TTTGATTCAA ACAGTCTTGT ATAGCTGTCG TTTGCCAACC TGTCCTCTTT
GCCTGAATAT GCCTCTTAGC AATTCTTGTG CACCATACTA ACTCAGTTAT AGGGTAAGGG
TATCTCCTCC TCCGCCGTTC CATACTCTAG AAACGCTCCA GCTTGGTTCA AGCTCTCCAC
TGACGAAGTT GTTGAACAAG TCATCAAGTA CGCCAGAAAG GGTTTGACTC CTTCCCAAAT
CGGTGTTATC TTGAGAGATG CTCACGGTGT TTCCCAAACC AAGATTGTCA CTGGTAACAA
GATCTTGAGA ATCTTGAAGT CCAACGGTTT GGCTCCAGAA ATCCCAGAAG ACTTGTACTT
CTTGATCAAG AAGGCTGTCT CTGTCAGAAA GCACTTGGAA AGAAACAGAA AGGACAAGGA
CTCTAAGTTC AGATTGATTT TGATCGAATC TAGAATCCAC AGATTGGCCA GATACTACAG
AACCGTCTCT GTCTTGCCTC CTAACTGGAA GTACGAATCT GCCACTGCCT CTGCTTTGGT
TAACTAG
 
Protein sequence
MGRMHSSGKG ISSSAVPYSR NAPAWFKLST DEVVEQVIKY ARKGLTPSQI GVILRDAHGV 
SQTKIVTGNK ILRILKSNGL APEIPEDLYF LIKKAVSVRK HLERNRKDKD SKFRLILIES
RIHRLARYYR TVSVLPPNWK YESATASALV N