| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_47351 |
|---|
| Symbol | TRA12 |
|---|
| ID | 4839507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 294143 |
|---|
| End bp | 301123 |
|---|
| Gene Length | 6981 bp |
|---|
| Protein Length | 2303 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640390822 |
|---|
| Product | Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily TRA1 |
|---|
| Protein accession | XP_001384717 |
|---|
| Protein GI | 150865481 |
|---|
| COG category | [B] Chromatin structure and dynamics
[D] Cell cycle control, cell division, chromosome partitioning
[L] Replication, recombination and repair
[T] Signal transduction mechanisms
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5032] Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.515914 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATGGG CCCAAATTAA CACATTAAGA CAAATAGCTG GCCAGGGTTT GGATAATAAC
CACACTGTTC AGATTGTTAT GGCAATCTTG AATATATTCC ATCTTCTTCC ACCAAAAGCG
TATACATTCA TGGAAGAAAT CATCAGCACT TTACAATACT TAGAAGGTCA CTTGGATCGT
CACCAAAACT CTCCCTTCAG AGAGCCAGTT TCTAAGTTTT TAAACAGATT TGCTGAGAAT
TGCATGGATT ATTACATCAC CAACTTCAAG AACAGAAAAC TCGGGAACAT GCTTGCTTCG
ATTGCTGGCA TGGAAGGCAG TGAGAAGATT AGAAGCGTTG CTAAAGAGAA GTTGGAAGCA
ATTTTTACTG ATGTTCAAAA TGAATCTGTT GATGAGATCA AGGTGGTGAA ATTTGCTAAC
ACTATTGATC TTCTTGAGTC AATCACAAAA TATGAACACG AATGGTTTGA CAACCAGAAA
GATTTGTTGC TTACTCTCTC AGAGTTGGTA GACAATATTG CAGATATCAA GAGCAATGCT
TCTTTGATTT CCTCAGCTCA TTTCCAAGCT GATCAGGCCA TTGAAAAGCT TCTGACTATA
ATTGTTCAAT ACTTGGTAAG AAACCCCAAT CAGGTGGATA TTGTTTTCAC TGTCGTAGAT
CGTCATTCCA AATTGAAAAT TAAGATTCCT AACCAATTAG AAGACTTTAT TTTTGATAAC
ATTGTGAAAT CTGATGACAT CGAATTCAGA CAAACCTATT TGAACAAATG TATTGATTTT
GTTAACGAAA GTGAGCCATG TTTGAAGTCC AAAATATTTT TCTTGAGAAA GGTATTTTCA
ACAATTCTTA TATACGAAGC TGAAAAGAAT GGCAAGATTG ACGTGTTCTT CAGCGAGGAC
TCGTCGCCTG AATGGCTCAC AAAGATTTCC AACAACATAT GGAAGTCGAC CAATGATATC
ATTACTGATC ATACCTCCGG TAAGATGGAT AGCTACAGAT ATGCCTTGTT GGAGGTGACA
GCGACCTTAC TTAAATTGGC TCCTACCTTC ATTAGTGGAT TCCGTAAGGA TATCATCAAG
TTCAGTTGGA ACTATATCAA GTTGGAAGAT AATATTACGA AGCAAGTTGC CTATGTTACT
ACTTCGTACT TCATTTCTGC CTACGAAACT CCTGCTAAGC TTGCTACTCA AGTGTTCGTT
GCGCTTCTTA GAACACACCA AACTGATTCC AGACATTTAG TAAAGCAAGC ATTAGACATT
CTTGCACCTG TGATGTCTGT TAGAGTTGAG CAAGATTCTC CAGACAGTTG GTTGAAATGG
CCACGTCGTA TTCTTTCTGA AGATGGGTTC AATGTAACGC AAGTATTGAA TGTCTATCAG
TTCATTATTC AGCATCCTGA CCTTTTCTTT GTGGCGAGAG AACATTTTAC CTCCAACATA
ATCACTGCAA TGGGTAAGTT GACCATATTG GCCAATCCTG CAATTGAAAA TCAGGTGCTA
GCCATTGAGT TAGCCGAACT TATCTTGAAA TGGGAAAGAA AGGCAAAGTT GTTGAAGAGT
GAAAAGGAAA GCAATGGAAC CCTTGAAAAG GTTGAGGTTA CAGAATCAAC AGTTAAAGAT
GAAGAAGCAG ACGAAAGCAT GGAAGTAGAT GAAGAAAAGG TGAATCCTGA TGAAGCCAAA
GAAGAAGCTG GTAGTGAAAA TGATGCTACA AATGGAAATG AAGAAGAAGA CAAAAAGGGA
TACGAAAGCG ATTTCACTAC TTCTCCTAGT TATTCCATTC CCTTTGGCCA AAGAGAAGCA
TGTGTTACTT TCTTGATTAG ATACGTTTGT ATCAGTCCAC AGAGAGCATC TGAAAGTGAA
CTTGGTCAGA AAGCCTTGGG CATCTTGTAC GATTTATTGA GTCCTGATCA CTGGTCTGAA
GTTTCTGTCA AGCTTACCTT CTTTGAGAAG TTCTTGTTGT CGAACGATTT GAACTCATCG
AACTTGTTGG GCTACTGTTT GAATGCTTTG GAAGTTTTGG GAGTTGTTCT TGAGTGGAAA
AAGCTGGAAT GGATCGTATC CAACCTTCGA TATTTGCACA AGCTCTTAGA GAAGTGTATC
AAGTCTGATA ATCATGATAT CCAAGAGGTA TTACAGCGTG TTCTCCGTAT AGTTTTGCAA
GCTATCAATG ACCAGAGGGA ATCAGAAGAT GACGAAGAAG AAGAAGAAGA TGTCAAGGAA
TTCATTAACT TACTTTCTAC TACAGTTTCT GAAGATTTGG GTGACATGCC ATCTGTTGCT
GCTGGTGTAA CTTTGTCGTG GACATTAGCC AACTATAGAC CATCTATATT GGATGCTCTC
TTACCACTGA TTATGAGAAC ATTCAGCAAG TTGTGTAAGG ATCATATTAC CATTACACAT
CAAGGATCTC AATCATCTTC TAAGGATAGT TCCAACTCAG AATACGAAGC TAAGATGACT
ACTAGATTGT TGGAGAAGAT TCTCAATTTG TCTTCTATGA GAATCTCGAA TTTGGGTGAC
CAAAGAAGAA TCTTCTTATC TTTGTTGGCA CAACTTATTG AAAGATCATT GGATAAAGAC
ACACTTGAGA AGATCATTAA GATCGTAAAG AACTGGGTCT TTTCAAGAAC AGATCTTTTC
CCAACTACAA AAGAAAAGGC AGTCATTTTG TCAAAGATGA TGGTGTTTGA AATCAGAGGA
GAGCCAACAT TGTCGAAAGA ATTCTATCAG ATTATTGTAG ATATCTTTGA AGATGATACT
TTCAGTTGTA CGGAGTTGAC AGTCAGAATG GAGCAACCAT TCTTAGTGGG AACTCGTTCG
GCAGATGTTT CTATTAGACG CAAGTTGATG TCTATTTTGA ACAGTAGCTT GGAGAAGGAT
ATTAGCAAGA GATTGTACTA TGTGATTCGA GAGCAGAATT GGGAATTCCT AGCTGATTAT
CCATGGCTAA ACCAAGCAGT TCAGTTGCTT TATGGCTCCT TTAACTTGGA CAAGAGACTA
CAAGTCGTCG ACGAAGAGAA CAAGCTTGCG CCATTAAATG CCTTGAAGGT TCCTGATATG
GATGGTAAGA TGGAGATTGA ACGTGAAACC AAGGACTTGC AAGAGTTGTT GAAGAAGCAC
GATGATTTCT TGATCAAGGT TGCTGACGTT AAAGCGGGTG ATGTTCTTGA GCCATTGATT
GATTTGTTCT ACCAAAGCAG TGAAGCTATT CACCGTGCCT GGTCCAGCAT ATTCCCCATT
GCTTTTATGT CTATTCCAAG ATCTGAACAT CTAGATTTCA CGAGATTTTT GGTAATTTTG
TTGTCGAAGG ACTACCACAC TCGACAAATC GATAGCAGAC CTAATGTGAT TCAATCTCTT
TTGGAAGGTA TTGCCAAATG TGACGATCTT CAGTTGCCAC CATTTGCGGT AGAGTGTCTT
GCTTCCAACT TCAATTCCTG GTCGCAAGGT ATCCATATTC TTGAGAATAT TGAGGAACAA
TCAGTAAATG GAAATGCTGA AGTTCGTGAA GTTACTCAAG ATGCTCTCGC CAAATTGTAT
GCAACATTGA AGGAAGACGA CATGTTCTAT GGATTGTGGA GAAGAAGAGC CAAATATGCC
GAGACAATTG GTGCTCTTTC TTTTGAACAG ATAGGACTCT GGGACAAGGC TCAACAATTA
TATGAGACTG CTCAAATAAA GGCAAGAAGT GGTGCATTAC CATACGGTGA GTCTGAGTAT
GCACTTTGGG AAGACCATTG GATCTTGTGT GCCGAGAAAT TGCAACACTG GGACATTCTC
ACTGATTTGG CCAGACACGA GGGTTTCTCG GACTTGTTGC TTGAATGTGG CTGGAGAGTC
GCTGATTGGT ACAACGACAG AGAAACTCTT GATCAGACTG TCAAGAACGT CATGGATGTT
CCTACACCAC GTCGTCAAAT ATTTGAGACC TTCCTTTGTT TGCAAGGATT TGGACAAGGT
AAGGAGACTT TGCAAGACCT CTCAAGGTTA TGTGATGAAG GTATCCAATT GGCTTTAAGA
AAATGGCATG GATTACCACA CAGGTTCAAC AATGCTCACA TTCCGTTGTT GCACACTTTC
CAACAGTATG TTGAATTCAT GGAAGCCAGC CAGGTTTATG CTAGTTTGGT TTCTACTAAC
GCTCAGAACT TGGATGTGAA GTCTCAGGAA TTGAAGAGAG TCCTCCAAGT ATGGCGTGAA
AGATTGCCCA ACATCTGGGA TGATATCAAC ATCTGGAACG ATCTTGTGAC GTGGCGTCAA
CATGCCTTCC AAGTCATCAA TAAGGTCTAC ATGCCTTTCA TTCCTATGTT GCAACAATCC
AACTCAGGTG GAAATGCCAA CTCGTATGCC TACCGTGGCT TCCACGAGAT TGCCTGGGTA
ATCAATAGAT TTGCTCATGT AGCCAGAAAG CATAACATGT CTGAAGTTTG TATCAAGGAA
TTGACAAGAA TCTACCAGTT GCCCAACATT GAAATCCAAG AAGCTTTCTT GAAGTTGAAA
GAACAAGTTA AGTGTCACTA CCAGAATCCT AATGAGTTGA ACACTGGTCT TGATGTCATT
AGCAACACCA ACTTAGTATA CTTTGCTACT CAACAAAAGG CTGAATTCTT CACGTTGAAG
GGTATGTTCC TTAGTAAGTT ACAGCAGAAG GTAGAAGCCA ACAAGGCATT CGCCACTTCA
GTTCAAATTG ATCTTAACTT GCCTAAAGCT TGGGCCGAAT GGGGTATGTT CAACGACAGA
AGATTCAAGG AGAATCCCAA TGACATGATC TATGCCAACA ACGCCATCAG TTGTTATTTG
CAAGCTGCTG GTCTCTACAA GAACGGTAAA ACTAGAAAGT TGTTGGCCCG GATCTTGTGG
TTGATTAGTT TGGATGAAGC TTCTGGTACG TTGTCTCAAG CATTTGAGGA TTTCCGTGGT
GAAGTTCCTC TTTGGTATTG GATTACTTTT ATTCCACAGT TGTTGACTTC GTTGTCTCAT
AAGGAAGCAA AACTTGCTAG ACAAGTTCTC GTACGTATTG CTAAGAGCTA TCCACAAGCT
TTACACTTCC AGCTTCGGAC CACAAAAGAA GACTTTGCTG CTCAACAACG TCAAGCCATT
GAAATTGCTC GCCAACAAGC TGCACAGTCA GCTTCTCAGA ATGGATCAAC AAAGAGTGCC
GATACCAATG GAGCAAAGAC TGAAGAAAAC AAGCCTGACG CTACTGAACC TGGTGCTGGT
ACTGGTGCTG GTGAAACTTC TCCTACAAAC GGAGATACAA AACCTTCTCA GTCGGAATCT
CAAGCTTCTC CATCAGCTGC TACAAGTGGA ACTAAGGCAA CTGAAAATCC GGTAAAGCCA
AACATTCCTG GCTCTGTTCG CCAAGCTTTA GAGCATGTAG AAGAAATCAT GGGAATCTTG
AAAACAGCCT ATCCATTGTT GGCTCTTTCT TTGGAATCTC TTGTGGACCA AATCAATCAA
CGATTCAAAT GTACGGCTGA TGAAGACGCT TACAGACTTG GAGTTGCTCT TCTTAACGAT
GGTGTTCAGT ATTTGAATCG TCTTGGCAAT CCCCGTGACG ATGCCAAGTT ACCTCCTGTC
ACAGAGGCCA ATATCACAAG ATTTGCCGAA ACAGTTCTTC CAAAGCAAAT CAGAGCTGAA
TTCGAAAAAG ATCTCGTTAT AGGCAAACCT AACTTGGAGA CTTACATCAC CAAGTTACGC
AAATGGAGGG ACCGTCTTGA AGATAAGCTT GACAGAAGAT TCAGTGAAGT CAACTTGGAG
AATTTGTGTC CTCATTTGAG TGAATTCCAT CACCAAAAGT TCGAAGATAT TGAAGTTCCT
GGCCAGTACT TGTTGAACAA GGACAACAAC AGCCACTTCG TCAAAATTGA AAGATTCCTT
CCAACGATTG GTTTGGCTCG TGGCACGAAT GCCTGTTATA AAAGATTAAG AATTCGTGGT
AACGATGGTA GTTTGCATAC TTTTGCTGTA CAGTTCCCAG CAGCTCGTCA TTGTCGTCGG
GAAGAGTGTA TTTTCCAATT GTTCCGGATT TTCAATGATA CCATTTCAAG AAAGGTAGAA
ACTCGTCGTC GTAACATCCT GTTCACGCTT CCTATAGCAG TACCTTTGTC ACCACATATC
CGTATCATTA GCGATGATTC CAAGGATATC ACGATGCAGA AGGTTTACGA GGACTATTGT
AGGCGTAATG GTAAGAGTCG TGACGAGCCC TTCATCTACA CTATTGAGAA ATTGAGAGCC
GCCTTCGACC AGCGTTTGCC AAAGCCTGAC ATCATGAGTA TAAGAGTTGA GATCTTAAGT
GCCATTCAAG CATTACTTGT ACCTTCAACT GTGTTGAAGA ACTATTTTGT TGACCTTTAT
CCACAATTTG AAGACTTCTG GTTATTCCGT AAGCAGTTCA CCTCACAATA TGCTTCATTC
ATCTTCATTA CCTACATGAT GTGTGTAAAC ACTAGACAGC CTCAAAAGAT TCACGTCAAC
ATGGGCTCTG GTAGCGTTTG GACTTCAGAT ATGTTGCCAT GTAAGATTGC AAGCAAGAGT
GCCTTGATCG ATAACCCACA GGGAAGACCT GCTCCTTTGT TTTACAACGC TGAAATGGTT
CCATTCAGGT TGACTCCTAA CATCCAGAAG TTGATTGGTG AAACAAGCTT GGAAGGGGTT
TTGGCTGTTT ACATCTTATG CATAGCTAGA GCCTTGACTG AGCCAGAATC TGACTTGGAA
CAGTTCTTGA CTTTGTTTGT ACGTGATGAA GTTGTCTCAT GGTGTGCTCA ACAAGATCCT
CCTCGTTCTA TTCCACAAGA CAAGCAGTTA CGTGAAATTG TTCGTATTAA CGTAGAACTT
ATCATCAAGA GAGTTATCCA AATTGGCCAT ATCTCGTCTG GCCCTTCTGT TGCTACACAA
AACGTCTTGG AGTTGATCTC ACAAGCTGTT AACCCTCGTA ACTTGGCCGC AGCCGATACA
TTATGGATGG CCTACTTTTA A
|
|---|
| Protein sequence | MAWAQINTLR QIAGQGLDNN HTVQIVMAIL NIFHLLPPKA YTFMEEIIST LQYLEGHLDR
HQNSPFREPV SKFLNRFAEN CMDYYITNFK NRKLGNMLAS IAGMEGSEKI RSVAKEKLEA
IFTDVQNESV DEIKVVKFAN TIDLLESITK YEHEWFDNQK DLLLTLSELV DNIADIKSNA
SLISSAHFQA DQAIEKLSTI IVQYLVRNPN QVDIVFTVVD RHSKLKIKIP NQLEDFIFDN
IVKSDDIEFR QTYLNKCIDF VNESEPCLKS KIFFLRKVFS TILIYEAEKN GKIDVFFSED
SSPEWLTKIS NNIWKSTNDI ITDHTSGKMD SYRYALLEVT ATLLKLAPTF ISGFRKDIIK
FSWNYIKLED NITKQVAYVT TSYFISAYET PAKLATQVFV ALLRTHQTDS RHLVKQALDI
LAPVMSVRVE QDSPDSWLKW PRRILSEDGF NVTQVLNVYQ FIIQHPDLFF VAREHFTSNI
ITAMGKLTIL ANPAIENQVL AIELAELILK WERKAKLLKS EKESNGTLEK VNPDEAKEEA
GSENDATNGN EEEDKKGYES DFTTSPSYSI PFGQREACVT FLIRYVCISP QRASESELGQ
KALGILYDLL SPDHWSEVSV KLTFFEKFLL SNDLNSSNLL GYCLNALEVL GVVLEWKKSE
WIVSNLRYLH KLLEKCIKSD NHDIQEVLQR VLRIVLQAIN DQRESEDDEE EEEDVKEFIN
LLSTTVSEDL GDMPSVAAGV TLSWTLANYR PSILDALLPS IMRTFSKLCK DHITITHQGS
QSSSKDSSNS EYEAKMTTRL LEKILNLSSM RISNLGDQRR IFLSLLAQLI ERSLDKDTLE
KIIKIVKNWV FSRTDLFPTT KEKAVILSKM MVFEIRGEPT LSKEFYQIIV DIFEDDTFSC
TELTVRMEQP FLVGTRSADV SIRRKLMSIL NSSLEKDISK RLYYVIREQN WEFLADYPWL
NQAVQLLYGS FNLDKRLQVV DEENKLAPLN ALKVPDMDGK MEIERETKDL QELLKKHDDF
LIKVADVKAG DVLEPLIDLF YQSSEAIHRA WSSIFPIAFM SIPRSEHLDF TRFLVILLSK
DYHTRQIDSR PNVIQSLLEG IAKCDDLQLP PFAVECLASN FNSWSQGIHI LENIEEQSVN
GNAEVREVTQ DALAKLYATL KEDDMFYGLW RRRAKYAETI GALSFEQIGL WDKAQQLYET
AQIKARSGAL PYGESEYALW EDHWILCAEK LQHWDILTDL ARHEGFSDLL LECGWRVADW
YNDRETLDQT VKNVMDVPTP RRQIFETFLC LQGFGQGKET LQDLSRLCDE GIQLALRKWH
GLPHRFNNAH IPLLHTFQQY VEFMEASQVY ASLVSTNAQN LDVKSQELKR VLQVWRERLP
NIWDDINIWN DLVTWRQHAF QVINKVYMPF IPMLQQSNSG GNANSYAYRG FHEIAWVINR
FAHVARKHNM SEVCIKELTR IYQLPNIEIQ EAFLKLKEQV KCHYQNPNEL NTGLDVISNT
NLVYFATQQK AEFFTLKGMF LSKLQQKVEA NKAFATSVQI DLNLPKAWAE WGMFNDRRFK
ENPNDMIYAN NAISCYLQAA GLYKNGKTRK LLARILWLIS LDEASGTLSQ AFEDFRGEVP
LWYWITFIPQ LLTSLSHKEA KLARQVLVRI AKSYPQALHF QLRTTKEDFA AQQRQAIEIA
RQQAAQSASQ NGSTKSADTN GAKTEENKPD ATEPGAGTGA GETSPTNGDT KPSQSESQAS
PSAATSGTKA TENPVKPNIP GSVRQALEHV EEIMGILKTA YPLLALSLES LVDQINQRFK
CTADEDAYRL GVALLNDGVQ YLNRLGNPRD DAKLPPVTEA NITRFAETVL PKQIRAEFEK
DLVIGKPNLE TYITKLRKWR DRLEDKLDRR FSEVNLENLC PHLSEFHHQK FEDIEVPGQY
LLNKDNNSHF VKIERFLPTI GLARGTNACY KRLRIRGNDG SLHTFAVQFP AARHCRREEC
IFQLFRIFND TISRKVETRR RNISFTLPIA VPLSPHIRII SDDSKDITMQ KVYEDYCRRN
GKSRDEPFIY TIEKLRAAFD QRLPKPDIMS IRVEILSAIQ ALLVPSTVLK NYFVDLYPQF
EDFWLFRKQF TSQYASFIFI TYMMCVNTRQ PQKIHVNMGS GSVWTSDMLP CKIASKSALI
DNPQGRPAPL FYNAEMVPFR LTPNIQKLIG ETSLEGVLAV YILCIARALT EPESDLEQFL
TLFVRDEVVS WCAQQDPPRS IPQDKQLREI VRINVELIIK RVIQIGHISS GPSVATQNVL
ELISQAVNPR NLAAADTLWM AYF
|
|---|
| |